miRNA display CGI


Results 101 - 120 of 313 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6494 5' -58.2 NC_001847.1 + 16617 0.67 0.739614
Target:  5'- gCGugGucuuuGGGgGGGGgcGCGGCgGCu -3'
miRNA:   3'- aGUugUu----CCCgCCCCuuCGUCGgCGu -5'
6494 5' -58.2 NC_001847.1 + 70240 0.67 0.729784
Target:  5'- -uGACGcgcGGGGCGGGc-GGCGGgCGCGc -3'
miRNA:   3'- agUUGU---UCCCGCCCcuUCGUCgGCGU- -5'
6494 5' -58.2 NC_001847.1 + 16581 0.67 0.729784
Target:  5'- aCAGCGGGGuCGGGGcggcguGGGguGCCgGCGa -3'
miRNA:   3'- aGUUGUUCCcGCCCC------UUCguCGG-CGU- -5'
6494 5' -58.2 NC_001847.1 + 129644 0.67 0.71987
Target:  5'- cCGACgAAGuGGCGGucgaGGuugcGGCGGCCGCu -3'
miRNA:   3'- aGUUG-UUC-CCGCC----CCu---UCGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 5542 0.67 0.709879
Target:  5'- cUCGcACcGGcGGCGGcGGcAGCAGCgGCAg -3'
miRNA:   3'- -AGU-UGuUC-CCGCC-CCuUCGUCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 15331 0.67 0.709879
Target:  5'- gUAGCGGGGGCGGgcGGggGguGC-GUg -3'
miRNA:   3'- aGUUGUUCCCGCC--CCuuCguCGgCGu -5'
6494 5' -58.2 NC_001847.1 + 43455 0.67 0.709879
Target:  5'- -gAGCGAa-GCGGGaGccGCAGCCGCAg -3'
miRNA:   3'- agUUGUUccCGCCC-CuuCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 116440 0.67 0.709879
Target:  5'- ---uCGAGGGCGGuGGgcGCuGgCGCAc -3'
miRNA:   3'- aguuGUUCCCGCC-CCuuCGuCgGCGU- -5'
6494 5' -58.2 NC_001847.1 + 35304 0.67 0.71688
Target:  5'- -gGGCGGGGGCGGGcaacgcaAAGCacuaagcggcccccGGCCGCu -3'
miRNA:   3'- agUUGUUCCCGCCCc------UUCG--------------UCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 37145 0.67 0.718874
Target:  5'- cCAGCGggccuuuGGGGCGgccGGGAAGCGGCaccuCGUg -3'
miRNA:   3'- aGUUGU-------UCCCGC---CCCUUCGUCG----GCGu -5'
6494 5' -58.2 NC_001847.1 + 15102 0.67 0.71987
Target:  5'- -gAGCAaagGGGGCggucgGGGGAGGgccuaGGCCGCu -3'
miRNA:   3'- agUUGU---UCCCG-----CCCCUUCg----UCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 117323 0.67 0.71987
Target:  5'- gCGACcuAGcGGCGGGG-GGCGGCCu-- -3'
miRNA:   3'- aGUUGu-UC-CCGCCCCuUCGUCGGcgu -5'
6494 5' -58.2 NC_001847.1 + 124711 0.67 0.71987
Target:  5'- -gAGCcGGGcGCGGGGGcGGCAG-CGCGa -3'
miRNA:   3'- agUUGuUCC-CGCCCCU-UCGUCgGCGU- -5'
6494 5' -58.2 NC_001847.1 + 125575 0.67 0.71987
Target:  5'- gCGGCcgcGGGCGGcGGGcuGGaCGGCUGCAg -3'
miRNA:   3'- aGUUGuu-CCCGCC-CCU--UC-GUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 132603 0.67 0.729784
Target:  5'- cCGGCcc-GGCGGcGGGAGC-GCCGCc -3'
miRNA:   3'- aGUUGuucCCGCC-CCUUCGuCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 109644 0.68 0.669344
Target:  5'- aUAACAAaagcggggaguuGGGgGGGGggGCGG-CGCu -3'
miRNA:   3'- aGUUGUU------------CCCgCCCCuuCGUCgGCGu -5'
6494 5' -58.2 NC_001847.1 + 34652 0.68 0.669344
Target:  5'- ---cCGAGcGGCGcgccgaGGggGCGGCCGCGc -3'
miRNA:   3'- aguuGUUC-CCGCc-----CCuuCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 125233 0.68 0.677508
Target:  5'- gUCcGCGGGGGCGGGGcccgagaccacGCGGUCGg- -3'
miRNA:   3'- -AGuUGUUCCCGCCCCuu---------CGUCGGCgu -5'
6494 5' -58.2 NC_001847.1 + 119028 0.68 0.679546
Target:  5'- gCAGguGGGGCGcacgcuguGGGAAGCGGUaCGCc -3'
miRNA:   3'- aGUUguUCCCGC--------CCCUUCGUCG-GCGu -5'
6494 5' -58.2 NC_001847.1 + 98820 0.68 0.679546
Target:  5'- gCGGCAGGacgcacccucgcGGCGGcGGuGGCAGCgGCGc -3'
miRNA:   3'- aGUUGUUC------------CCGCC-CCuUCGUCGgCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.