miRNA display CGI


Results 121 - 140 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6494 5' -58.2 NC_001847.1 + 113545 0.68 0.659112
Target:  5'- cCAGCGaguuuaggGGGGCGGGGccccGCGGCCc-- -3'
miRNA:   3'- aGUUGU--------UCCCGCCCCuu--CGUCGGcgu -5'
6494 5' -58.2 NC_001847.1 + 111428 0.68 0.659112
Target:  5'- cUCGGcCGGGGGCGGGGgGAGgAG-CGCc -3'
miRNA:   3'- -AGUU-GUUCCCGCCCC-UUCgUCgGCGu -5'
6494 5' -58.2 NC_001847.1 + 16981 0.68 0.659112
Target:  5'- cCAGCGcAGGGagacgcgccccuCGGGGAcGCAGCgCGCc -3'
miRNA:   3'- aGUUGU-UCCC------------GCCCCUuCGUCG-GCGu -5'
6494 5' -58.2 NC_001847.1 + 42589 0.68 0.658087
Target:  5'- -gGACGAGGaCGGGGGuggugacagggacGGCGccGCCGCGg -3'
miRNA:   3'- agUUGUUCCcGCCCCU-------------UCGU--CGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 101443 0.68 0.648858
Target:  5'- -gAGCuggGGGGCGcGGAAacugccgccgcGCGGCCGCAa -3'
miRNA:   3'- agUUGu--UCCCGCcCCUU-----------CGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 101094 0.68 0.648858
Target:  5'- gUCGGC-GGGGCGGGcGGGCGcguucGCCGUc -3'
miRNA:   3'- -AGUUGuUCCCGCCCcUUCGU-----CGGCGu -5'
6494 5' -58.2 NC_001847.1 + 125233 0.68 0.677508
Target:  5'- gUCcGCGGGGGCGGGGcccgagaccacGCGGUCGg- -3'
miRNA:   3'- -AGuUGUUCCCGCCCCuu---------CGUCGGCgu -5'
6494 5' -58.2 NC_001847.1 + 119028 0.68 0.679546
Target:  5'- gCAGguGGGGCGcacgcuguGGGAAGCGGUaCGCc -3'
miRNA:   3'- aGUUguUCCCGC--------CCCUUCGUCG-GCGu -5'
6494 5' -58.2 NC_001847.1 + 20661 0.68 0.628318
Target:  5'- cUCAGC-AGGGCGGaGAcguccgccagcuGGCGGCCGa- -3'
miRNA:   3'- -AGUUGuUCCCGCCcCU------------UCGUCGGCgu -5'
6494 5' -58.2 NC_001847.1 + 110547 0.68 0.628318
Target:  5'- aUCGGCGAGGGUcgaucgauuaacGGGGcgcauauGCGGCCGg- -3'
miRNA:   3'- -AGUUGUUCCCG------------CCCCuu-----CGUCGGCgu -5'
6494 5' -58.2 NC_001847.1 + 53932 0.68 0.628318
Target:  5'- aCGGCGAcGGCGGcucugugcGcGAGGCGGCCGCc -3'
miRNA:   3'- aGUUGUUcCCGCC--------C-CUUCGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 54448 0.68 0.63859
Target:  5'- aCGAgGGGGGCGGGGAcG-AGCC-CGa -3'
miRNA:   3'- aGUUgUUCCCGCCCCUuCgUCGGcGU- -5'
6494 5' -58.2 NC_001847.1 + 29291 0.68 0.63859
Target:  5'- gCGGCGcuGGCGGcagaGGccGCGGCCGCGg -3'
miRNA:   3'- aGUUGUucCCGCC----CCuuCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 74640 0.68 0.63859
Target:  5'- cUCGcGCGA-GGCGGGGcAGCuGCUGCGc -3'
miRNA:   3'- -AGU-UGUUcCCGCCCCuUCGuCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 124538 0.68 0.63859
Target:  5'- cCAGCAGGGcGCGGGccGGCgccGGcCCGCGc -3'
miRNA:   3'- aGUUGUUCC-CGCCCcuUCG---UC-GGCGU- -5'
6494 5' -58.2 NC_001847.1 + 128728 0.68 0.63859
Target:  5'- --uGCGAGGGggaGGGGGuGGUGGCCGUg -3'
miRNA:   3'- aguUGUUCCCg--CCCCU-UCGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 115861 0.68 0.648858
Target:  5'- aCAACGAGGGacCGGaGGucGC-GCCGCc -3'
miRNA:   3'- aGUUGUUCCC--GCC-CCuuCGuCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 13115 0.68 0.648858
Target:  5'- gCGGCcGGGGCGcgcGGGcGGC-GCCGCGc -3'
miRNA:   3'- aGUUGuUCCCGC---CCCuUCGuCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 98820 0.68 0.679546
Target:  5'- gCGGCAGGacgcacccucgcGGCGGcGGuGGCAGCgGCGc -3'
miRNA:   3'- aGUUGUUC------------CCGCC-CCuUCGUCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 27719 0.68 0.648858
Target:  5'- -gGGCAAGGGCgucagcGGcGGAAGCcGCgGCGg -3'
miRNA:   3'- agUUGUUCCCG------CC-CCUUCGuCGgCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.