miRNA display CGI


Results 141 - 160 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6494 5' -58.2 NC_001847.1 + 30427 0.68 0.669344
Target:  5'- cUCGugGcGGGCGcGGAGGCgccggGGCUGCAc -3'
miRNA:   3'- -AGUugUuCCCGCcCCUUCG-----UCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 17055 0.68 0.669344
Target:  5'- gCAGCucGGGCGGGcGGuaaacGGCcggcgugccAGCCGCGu -3'
miRNA:   3'- aGUUGuuCCCGCCC-CU-----UCG---------UCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 132192 0.68 0.659112
Target:  5'- gCGcCGA-GGCGGccgccgcgcuGGAGGCGGCCGCGc -3'
miRNA:   3'- aGUuGUUcCCGCC----------CCUUCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 111428 0.68 0.659112
Target:  5'- cUCGGcCGGGGGCGGGGgGAGgAG-CGCc -3'
miRNA:   3'- -AGUU-GUUCCCGCCCC-UUCgUCgGCGu -5'
6494 5' -58.2 NC_001847.1 + 54448 0.68 0.63859
Target:  5'- aCGAgGGGGGCGGGGAcG-AGCC-CGa -3'
miRNA:   3'- aGUUgUUCCCGCCCCUuCgUCGGcGU- -5'
6494 5' -58.2 NC_001847.1 + 11827 0.68 0.659112
Target:  5'- aCAGCGcgcGGGgGGGGggGC-GCCuaGCGg -3'
miRNA:   3'- aGUUGUu--CCCgCCCCuuCGuCGG--CGU- -5'
6494 5' -58.2 NC_001847.1 + 60273 0.68 0.679546
Target:  5'- -gGugAGGGGgGaGGGGAGCcgccaccacAGCCGCc -3'
miRNA:   3'- agUugUUCCCgC-CCCUUCG---------UCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 22420 0.68 0.677508
Target:  5'- gUCcGCGGGGGCGGGGcccgagaccacGCGGUCGg- -3'
miRNA:   3'- -AGuUGUUCCCGCCCCuu---------CGUCGGCgu -5'
6494 5' -58.2 NC_001847.1 + 43654 0.68 0.669344
Target:  5'- --cGCGAGGGCucGGGuGGCccGCCGCAg -3'
miRNA:   3'- aguUGUUCCCGc-CCCuUCGu-CGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 6831 0.68 0.669344
Target:  5'- aUAACAAaagcggggaguuGGGgGGGGggGCGG-CGCu -3'
miRNA:   3'- aGUUGUU------------CCCgCCCCuuCGUCgGCGu -5'
6494 5' -58.2 NC_001847.1 + 67506 0.68 0.669344
Target:  5'- cUCGACGAGGGCacGGucGCGGaCGCGg -3'
miRNA:   3'- -AGUUGUUCCCGccCCuuCGUCgGCGU- -5'
6494 5' -58.2 NC_001847.1 + 14020 0.68 0.669344
Target:  5'- gCAGCAGGcGGCGGc---GCAGCgCGCAg -3'
miRNA:   3'- aGUUGUUC-CCGCCccuuCGUCG-GCGU- -5'
6494 5' -58.2 NC_001847.1 + 13245 0.68 0.669344
Target:  5'- cCAGCGGGGccacGCGGGcGGuucgcaGGCAGgCCGCGu -3'
miRNA:   3'- aGUUGUUCC----CGCCC-CU------UCGUC-GGCGU- -5'
6494 5' -58.2 NC_001847.1 + 29379 0.68 0.659112
Target:  5'- gCGcCGA-GGCGGccgccgcgcuGGAGGCGGCCGCGc -3'
miRNA:   3'- aGUuGUUcCCGCC----------CCUUCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 76415 0.68 0.627291
Target:  5'- gCGGCGGGGGCaccccgcGGcGGGAGCGcGCgCGCGg -3'
miRNA:   3'- aGUUGUUCCCG-------CC-CCUUCGU-CG-GCGU- -5'
6494 5' -58.2 NC_001847.1 + 20661 0.68 0.628318
Target:  5'- cUCAGC-AGGGCGGaGAcguccgccagcuGGCGGCCGa- -3'
miRNA:   3'- -AGUUGuUCCCGCCcCU------------UCGUCGGCgu -5'
6494 5' -58.2 NC_001847.1 + 110547 0.68 0.628318
Target:  5'- aUCGGCGAGGGUcgaucgauuaacGGGGcgcauauGCGGCCGg- -3'
miRNA:   3'- -AGUUGUUCCCG------------CCCCuu-----CGUCGGCgu -5'
6494 5' -58.2 NC_001847.1 + 53932 0.68 0.628318
Target:  5'- aCGGCGAcGGCGGcucugugcGcGAGGCGGCCGCc -3'
miRNA:   3'- aGUUGUUcCCGCC--------C-CUUCGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 74640 0.68 0.63859
Target:  5'- cUCGcGCGA-GGCGGGGcAGCuGCUGCGc -3'
miRNA:   3'- -AGU-UGUUcCCGCCCCuUCGuCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 29291 0.68 0.63859
Target:  5'- gCGGCGcuGGCGGcagaGGccGCGGCCGCGg -3'
miRNA:   3'- aGUUGUucCCGCC----CCuuCGUCGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.