miRNA display CGI


Results 161 - 180 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6494 5' -58.2 NC_001847.1 + 74640 0.68 0.63859
Target:  5'- cUCGcGCGA-GGCGGGGcAGCuGCUGCGc -3'
miRNA:   3'- -AGU-UGUUcCCGCCCCuUCGuCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 13115 0.68 0.648858
Target:  5'- gCGGCcGGGGCGcgcGGGcGGC-GCCGCGc -3'
miRNA:   3'- aGUUGuUCCCGC---CCCuUCGuCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 115557 0.68 0.628318
Target:  5'- -gGAUcGGGGCGGGGAGGgGGgCGa- -3'
miRNA:   3'- agUUGuUCCCGCCCCUUCgUCgGCgu -5'
6494 5' -58.2 NC_001847.1 + 38166 0.68 0.628318
Target:  5'- ---cCGAGGGaccGGAAGCGGCCGUAc -3'
miRNA:   3'- aguuGUUCCCgccCCUUCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 102070 0.69 0.587335
Target:  5'- gCAGCAAGGGCaGGc--GCGGgCCGCGc -3'
miRNA:   3'- aGUUGUUCCCGcCCcuuCGUC-GGCGU- -5'
6494 5' -58.2 NC_001847.1 + 96852 0.69 0.587335
Target:  5'- gCGuCGGGGGCGGcGGugggcGGCGGuCCGCGc -3'
miRNA:   3'- aGUuGUUCCCGCC-CCu----UCGUC-GGCGU- -5'
6494 5' -58.2 NC_001847.1 + 66500 0.69 0.577153
Target:  5'- gUCGGCcagcGGcGCGGuGGAGGCGcGCCGCc -3'
miRNA:   3'- -AGUUGuu--CC-CGCC-CCUUCGU-CGGCGu -5'
6494 5' -58.2 NC_001847.1 + 25736 0.69 0.56701
Target:  5'- aCGAgAAGcGGCGGcGGGcGGCGGCgGCAc -3'
miRNA:   3'- aGUUgUUC-CCGCC-CCU-UCGUCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 17789 0.69 0.56701
Target:  5'- uUCGGCGGGGcuuugcucggccGCGGGG-GGCgaGGCCGCc -3'
miRNA:   3'- -AGUUGUUCC------------CGCCCCuUCG--UCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 21859 0.69 0.56701
Target:  5'- gCAGCAGguGGuGCGGGGGcuGCGGCgCGCu -3'
miRNA:   3'- aGUUGUU--CC-CGCCCCUu-CGUCG-GCGu -5'
6494 5' -58.2 NC_001847.1 + 69 0.69 0.597549
Target:  5'- -gGGCGGGGGCGGGGuGGgGGaugggCGCGg -3'
miRNA:   3'- agUUGUUCCCGCCCCuUCgUCg----GCGU- -5'
6494 5' -58.2 NC_001847.1 + 52800 0.69 0.597549
Target:  5'- gCGACAuGGGCGGGGcuauaGGUCGCu -3'
miRNA:   3'- aGUUGUuCCCGCCCCuucg-UCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 96515 0.69 0.622156
Target:  5'- uUCGACGAguGGGCGGcaacGGAccgcgcgcgccggcuGuGCAGCCGCGc -3'
miRNA:   3'- -AGUUGUU--CCCGCC----CCU---------------U-CGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 132688 0.69 0.618049
Target:  5'- -gGACGGGGaCGGGGAcggcgaGGCGGCgGCc -3'
miRNA:   3'- agUUGUUCCcGCCCCU------UCGUCGgCGu -5'
6494 5' -58.2 NC_001847.1 + 54515 0.69 0.618049
Target:  5'- -gGugGGGGGCGGuGggGCggGGCCGUc -3'
miRNA:   3'- agUugUUCCCGCCcCuuCG--UCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 110240 0.69 0.618049
Target:  5'- -gGGgGGGGGgGGGGGcguacuugcAGCGGcCCGCAc -3'
miRNA:   3'- agUUgUUCCCgCCCCU---------UCGUC-GGCGU- -5'
6494 5' -58.2 NC_001847.1 + 105136 0.69 0.597549
Target:  5'- cCAGCAcgcGGGCGGGc-AGCGGCgGCu -3'
miRNA:   3'- aGUUGUu--CCCGCCCcuUCGUCGgCGu -5'
6494 5' -58.2 NC_001847.1 + 27522 0.69 0.601643
Target:  5'- gCGGCGGcGGCGGGGAcgcccgagaacGGCggcgcggcggcugggAGCCGCAu -3'
miRNA:   3'- aGUUGUUcCCGCCCCU-----------UCG---------------UCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 60856 0.69 0.597549
Target:  5'- gCGGCGccAGGGCGuccagcGcGggGCGGCCGCGc -3'
miRNA:   3'- aGUUGU--UCCCGCc-----C-CuuCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 9235 0.69 0.618049
Target:  5'- --cGCGGGGGCGGGGcuGauuGaCCGCAa -3'
miRNA:   3'- aguUGUUCCCGCCCCuuCgu-C-GGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.