Results 41 - 60 of 313 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6494 | 5' | -58.2 | NC_001847.1 | + | 53773 | 0.74 | 0.310946 |
Target: 5'- gCGGCGAGGGCGGcagcaccGCAGCCGCc -3' miRNA: 3'- aGUUGUUCCCGCCccuu---CGUCGGCGu -5' |
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6494 | 5' | -58.2 | NC_001847.1 | + | 28663 | 0.74 | 0.33301 |
Target: 5'- -aGAUggGGgacGCGGGGAAGCAGUaCGCGg -3' miRNA: 3'- agUUGuuCC---CGCCCCUUCGUCG-GCGU- -5' |
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6494 | 5' | -58.2 | NC_001847.1 | + | 53091 | 0.74 | 0.32553 |
Target: 5'- cUCAGCGuucGGCGGGGcGGCGGcCCGCc -3' miRNA: 3'- -AGUUGUuc-CCGCCCCuUCGUC-GGCGu -5' |
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6494 | 5' | -58.2 | NC_001847.1 | + | 4852 | 0.73 | 0.37228 |
Target: 5'- gUCAaaacGCAGGGGaGGGGggGgGGCgGCGg -3' miRNA: 3'- -AGU----UGUUCCCgCCCCuuCgUCGgCGU- -5' |
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6494 | 5' | -58.2 | NC_001847.1 | + | 74474 | 0.73 | 0.39731 |
Target: 5'- -gAGCGGGGGCuGGGcguguugaugcAGCAGCCGCGc -3' miRNA: 3'- agUUGUUCCCGcCCCu----------UCGUCGGCGU- -5' |
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6494 | 5' | -58.2 | NC_001847.1 | + | 130210 | 0.73 | 0.388847 |
Target: 5'- gCGGCGcggAGGGCGcGGGAAGC-GCgGCGg -3' miRNA: 3'- aGUUGU---UCCCGC-CCCUUCGuCGgCGU- -5' |
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6494 | 5' | -58.2 | NC_001847.1 | + | 32146 | 0.73 | 0.39731 |
Target: 5'- -gGGCGGGGGCGGGGGccccGGgGGCCaagacGCAg -3' miRNA: 3'- agUUGUUCCCGCCCCU----UCgUCGG-----CGU- -5' |
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6494 | 5' | -58.2 | NC_001847.1 | + | 134232 | 0.73 | 0.356201 |
Target: 5'- cCGGCGccGGCGGGcGGcggccGGCGGCCGCGg -3' miRNA: 3'- aGUUGUucCCGCCC-CU-----UCGUCGGCGU- -5' |
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6494 | 5' | -58.2 | NC_001847.1 | + | 8615 | 0.73 | 0.364179 |
Target: 5'- gCAgcGCAAGccccGcCGGGGGAGCGGCCGCu -3' miRNA: 3'- aGU--UGUUCc---C-GCCCCUUCGUCGGCGu -5' |
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6494 | 5' | -58.2 | NC_001847.1 | + | 107665 | 0.73 | 0.37228 |
Target: 5'- gUCAaaacGCAGGGGaGGGGggGgGGCgGCGg -3' miRNA: 3'- -AGU----UGUUCCCgCCCCuuCgUCGgCGU- -5' |
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6494 | 5' | -58.2 | NC_001847.1 | + | 47632 | 0.73 | 0.388847 |
Target: 5'- uUCGGCGGcGGCGGGcacgugcAAGCAGCCGCc -3' miRNA: 3'- -AGUUGUUcCCGCCCc------UUCGUCGGCGu -5' |
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6494 | 5' | -58.2 | NC_001847.1 | + | 92967 | 0.73 | 0.380504 |
Target: 5'- aCGGCucGGGCGGGcGGGCGGCgUGCAg -3' miRNA: 3'- aGUUGuuCCCGCCCcUUCGUCG-GCGU- -5' |
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6494 | 5' | -58.2 | NC_001847.1 | + | 73111 | 0.73 | 0.364179 |
Target: 5'- -aGGCccGGGUGGcGGAGGUAGCCGCc -3' miRNA: 3'- agUUGuuCCCGCC-CCUUCGUCGGCGu -5' |
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6494 | 5' | -58.2 | NC_001847.1 | + | 56383 | 0.73 | 0.388847 |
Target: 5'- cUCGGCGcucGGGuCGGGGAGGuCGGCCGg- -3' miRNA: 3'- -AGUUGUu--CCC-GCCCCUUC-GUCGGCgu -5' |
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6494 | 5' | -58.2 | NC_001847.1 | + | 31419 | 0.73 | 0.356201 |
Target: 5'- cCGGCGccGGCGGGcGGcggccGGCGGCCGCGg -3' miRNA: 3'- aGUUGUucCCGCCC-CU-----UCGUCGGCGU- -5' |
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6494 | 5' | -58.2 | NC_001847.1 | + | 73008 | 0.73 | 0.35541 |
Target: 5'- gCAGCGcGGGCGcGGAaccaggccgcggcAGCGGCCGCGg -3' miRNA: 3'- aGUUGUuCCCGCcCCU-------------UCGUCGGCGU- -5' |
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6494 | 5' | -58.2 | NC_001847.1 | + | 89572 | 0.73 | 0.380504 |
Target: 5'- cCGGCGAGGGCGuGGAGcGCGacgccGCCGCGg -3' miRNA: 3'- aGUUGUUCCCGCcCCUU-CGU-----CGGCGU- -5' |
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6494 | 5' | -58.2 | NC_001847.1 | + | 134959 | 0.73 | 0.39731 |
Target: 5'- -gGGCGGGGGCGGGGGccccGGgGGCCaagacGCAg -3' miRNA: 3'- agUUGUUCCCGCCCCU----UCgUCGG-----CGU- -5' |
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6494 | 5' | -58.2 | NC_001847.1 | + | 96351 | 0.72 | 0.40589 |
Target: 5'- gCGGCAAuGGCGGGGccGGCGGUgGCAa -3' miRNA: 3'- aGUUGUUcCCGCCCCu-UCGUCGgCGU- -5' |
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6494 | 5' | -58.2 | NC_001847.1 | + | 95356 | 0.72 | 0.441346 |
Target: 5'- gUCGACu--GGCGGGGGcuggcGGCGGaCCGCGc -3' miRNA: 3'- -AGUUGuucCCGCCCCU-----UCGUC-GGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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