miRNA display CGI


Results 81 - 100 of 313 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6494 5' -58.2 NC_001847.1 + 59347 0.71 0.497632
Target:  5'- cCGGCAucgGGGGCGGaGcGGCGGCgGCAg -3'
miRNA:   3'- aGUUGU---UCCCGCCcCuUCGUCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 71445 0.71 0.459719
Target:  5'- aCGACGAgguuggccccGGGCgcuuccGGGGGcauGGCGGCCGCGa -3'
miRNA:   3'- aGUUGUU----------CCCG------CCCCU---UCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 4976 0.71 0.497632
Target:  5'- ----gGGGGGCagcuGGGGugcGGCGGCCGCGg -3'
miRNA:   3'- aguugUUCCCG----CCCCu--UCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 127214 0.71 0.496667
Target:  5'- --cGCAAGcugcaaaacGGCGGGGGaagaagcGGCGGCCGCc -3'
miRNA:   3'- aguUGUUC---------CCGCCCCU-------UCGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 32982 0.71 0.488017
Target:  5'- -aGGCGccGGGGCGGGcagggcggccGGAGCGGCCGgGg -3'
miRNA:   3'- agUUGU--UCCCGCCC----------CUUCGUCGGCgU- -5'
6494 5' -58.2 NC_001847.1 + 32939 0.71 0.488017
Target:  5'- cCGGCGgcGGGGcCGGGGggGCggaggaGGCCGgGg -3'
miRNA:   3'- aGUUGU--UCCC-GCCCCuuCG------UCGGCgU- -5'
6494 5' -58.2 NC_001847.1 + 72684 0.71 0.469057
Target:  5'- cCGGCccugcuGAGGcCGGGGAgAGCGGCCGCc -3'
miRNA:   3'- aGUUG------UUCCcGCCCCU-UCGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 134630 0.71 0.469057
Target:  5'- aCAGCGuGGGCuGGGGGcgggccggcAGCAGgCGCGg -3'
miRNA:   3'- aGUUGUuCCCG-CCCCU---------UCGUCgGCGU- -5'
6494 5' -58.2 NC_001847.1 + 3972 0.71 0.459719
Target:  5'- gCGGCGAGGGCGccGGggGCcgGGCgCGCGg -3'
miRNA:   3'- aGUUGUUCCCGCc-CCuuCG--UCG-GCGU- -5'
6494 5' -58.2 NC_001847.1 + 451 0.71 0.450481
Target:  5'- gCAGCAGcGGCGGcGGcGGCGGCgGCGg -3'
miRNA:   3'- aGUUGUUcCCGCC-CCuUCGUCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 41371 0.7 0.517109
Target:  5'- cCAGcCAAGcGGCGGccGGGccgccgccGGCAGCCGCGc -3'
miRNA:   3'- aGUU-GUUC-CCGCC--CCU--------UCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 29105 0.7 0.517109
Target:  5'- aCGGCGcGGGCGGcGcGcGAGCGGCUGCGc -3'
miRNA:   3'- aGUUGUuCCCGCC-C-C-UUCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 103232 0.7 0.50733
Target:  5'- -gGGCccGGGGCGGGcGGGCGGCgGCGg -3'
miRNA:   3'- agUUGu-UCCCGCCCcUUCGUCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 419 0.7 0.50733
Target:  5'- -gGGCccGGGGCGGGcGGGCGGCgGCGg -3'
miRNA:   3'- agUUGu-UCCCGCCCcUUCGUCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 48071 0.7 0.517109
Target:  5'- --cGCGAaaGGCGGGGgcGCAcGCCGCGc -3'
miRNA:   3'- aguUGUUc-CCGCCCCuuCGU-CGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 56817 0.7 0.525973
Target:  5'- cCGGCGcgccuggGGGcGCGGGGAGGgggcggccCAGCCGCc -3'
miRNA:   3'- aGUUGU-------UCC-CGCCCCUUC--------GUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 74977 0.7 0.526961
Target:  5'- aCAGCGacGGGGCGGGGcgccAGGCucAGuCCGCc -3'
miRNA:   3'- aGUUGU--UCCCGCCCC----UUCG--UC-GGCGu -5'
6494 5' -58.2 NC_001847.1 + 17586 0.7 0.536883
Target:  5'- gCAGCAcGGGCGGGGcccgcggaAAGgGGuuGCGc -3'
miRNA:   3'- aGUUGUuCCCGCCCC--------UUCgUCggCGU- -5'
6494 5' -58.2 NC_001847.1 + 103617 0.7 0.556913
Target:  5'- cCGACGAGG-CGGGGGA-CGacGCCGCGg -3'
miRNA:   3'- aGUUGUUCCcGCCCCUUcGU--CGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 124645 0.7 0.525973
Target:  5'- gCAGCAgcgcGGGGCcgucGGGGAAGCccagcucGGCCuGCAu -3'
miRNA:   3'- aGUUGU----UCCCG----CCCCUUCG-------UCGG-CGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.