miRNA display CGI


Results 101 - 120 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6494 5' -58.2 NC_001847.1 + 130204 0.7 0.536883
Target:  5'- aUAGCGAGGuugcuCGGGGggGCGcuguuGCCGCc -3'
miRNA:   3'- aGUUGUUCCc----GCCCCuuCGU-----CGGCGu -5'
6494 5' -58.2 NC_001847.1 + 48071 0.7 0.517109
Target:  5'- --cGCGAaaGGCGGGGgcGCAcGCCGCGc -3'
miRNA:   3'- aguUGUUc-CCGCCCCuuCGU-CGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 419 0.7 0.50733
Target:  5'- -gGGCccGGGGCGGGcGGGCGGCgGCGg -3'
miRNA:   3'- agUUGu-UCCCGCCCcUUCGUCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 119522 0.7 0.556913
Target:  5'- ----gAGGGGCGGcGGccGCGGCCgGCAg -3'
miRNA:   3'- aguugUUCCCGCC-CCuuCGUCGG-CGU- -5'
6494 5' -58.2 NC_001847.1 + 804 0.7 0.556913
Target:  5'- cCGACGAGG-CGGGGGA-CGacGCCGCGg -3'
miRNA:   3'- aGUUGUUCCcGCCCCUUcGU--CGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 53855 0.7 0.556913
Target:  5'- --cGCGGGGGUcaGGGGGugcuguggGGCGGCCGUc -3'
miRNA:   3'- aguUGUUCCCG--CCCCU--------UCGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 25915 0.7 0.556913
Target:  5'- --uGCGAGGGgGaGGGggGUgguGGCCGUg -3'
miRNA:   3'- aguUGUUCCCgC-CCCuuCG---UCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 27391 0.7 0.536883
Target:  5'- aUAGCGAGGuugcuCGGGGggGCGcuguuGCCGCc -3'
miRNA:   3'- aGUUGUUCCc----GCCCCuuCGU-----CGGCGu -5'
6494 5' -58.2 NC_001847.1 + 123504 0.7 0.536883
Target:  5'- -aAGCGGGGcCGGGGccaGGGCuGCCGCGg -3'
miRNA:   3'- agUUGUUCCcGCCCC---UUCGuCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 70699 0.7 0.526961
Target:  5'- --cGCGGGcGGCGGcGGggGCGcCCGCGg -3'
miRNA:   3'- aguUGUUC-CCGCC-CCuuCGUcGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 124645 0.7 0.525973
Target:  5'- gCAGCAgcgcGGGGCcgucGGGGAAGCccagcucGGCCuGCAu -3'
miRNA:   3'- aGUUGU----UCCCG----CCCCUUCG-------UCGG-CGU- -5'
6494 5' -58.2 NC_001847.1 + 56817 0.7 0.525973
Target:  5'- cCGGCGcgccuggGGGcGCGGGGAGGgggcggccCAGCCGCc -3'
miRNA:   3'- aGUUGU-------UCC-CGCCCCUUC--------GUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 103617 0.7 0.556913
Target:  5'- cCGACGAGG-CGGGGGA-CGacGCCGCGg -3'
miRNA:   3'- aGUUGUUCCcGCCCCUUcGU--CGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 66255 0.7 0.546869
Target:  5'- cUCGGCAugcuGGGcCGGGGAGGCcucuucGGCCcgGCGc -3'
miRNA:   3'- -AGUUGUu---CCC-GCCCCUUCG------UCGG--CGU- -5'
6494 5' -58.2 NC_001847.1 + 38420 0.7 0.506357
Target:  5'- uUCGccGCAGGGGCGGGagcccgaGggGCGGgcaUCGCAg -3'
miRNA:   3'- -AGU--UGUUCCCGCCC-------CuuCGUC---GGCGU- -5'
6494 5' -58.2 NC_001847.1 + 27522 0.69 0.601643
Target:  5'- gCGGCGGcGGCGGGGAcgcccgagaacGGCggcgcggcggcugggAGCCGCAu -3'
miRNA:   3'- aGUUGUUcCCGCCCCU-----------UCG---------------UCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 105136 0.69 0.597549
Target:  5'- cCAGCAcgcGGGCGGGc-AGCGGCgGCu -3'
miRNA:   3'- aGUUGUu--CCCGCCCcuUCGUCGgCGu -5'
6494 5' -58.2 NC_001847.1 + 69 0.69 0.597549
Target:  5'- -gGGCGGGGGCGGGGuGGgGGaugggCGCGg -3'
miRNA:   3'- agUUGUUCCCGCCCCuUCgUCg----GCGU- -5'
6494 5' -58.2 NC_001847.1 + 52800 0.69 0.597549
Target:  5'- gCGACAuGGGCGGGGcuauaGGUCGCu -3'
miRNA:   3'- aGUUGUuCCCGCCCCuucg-UCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 96852 0.69 0.587335
Target:  5'- gCGuCGGGGGCGGcGGugggcGGCGGuCCGCGc -3'
miRNA:   3'- aGUuGUUCCCGCC-CCu----UCGUC-GGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.