miRNA display CGI


Results 121 - 140 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6494 5' -58.2 NC_001847.1 + 27522 0.69 0.601643
Target:  5'- gCGGCGGcGGCGGGGAcgcccgagaacGGCggcgcggcggcugggAGCCGCAu -3'
miRNA:   3'- aGUUGUUcCCGCCCCU-----------UCG---------------UCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 96852 0.69 0.587335
Target:  5'- gCGuCGGGGGCGGcGGugggcGGCGGuCCGCGc -3'
miRNA:   3'- aGUuGUUCCCGCC-CCu----UCGUC-GGCGU- -5'
6494 5' -58.2 NC_001847.1 + 60856 0.69 0.597549
Target:  5'- gCGGCGccAGGGCGuccagcGcGggGCGGCCGCGc -3'
miRNA:   3'- aGUUGU--UCCCGCc-----C-CuuCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 52800 0.69 0.597549
Target:  5'- gCGACAuGGGCGGGGcuauaGGUCGCu -3'
miRNA:   3'- aGUUGUuCCCGCCCCuucg-UCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 105136 0.69 0.597549
Target:  5'- cCAGCAcgcGGGCGGGc-AGCGGCgGCu -3'
miRNA:   3'- aGUUGUu--CCCGCCCcuUCGUCGgCGu -5'
6494 5' -58.2 NC_001847.1 + 96515 0.69 0.622156
Target:  5'- uUCGACGAguGGGCGGcaacGGAccgcgcgcgccggcuGuGCAGCCGCGc -3'
miRNA:   3'- -AGUUGUU--CCCGCC----CCU---------------U-CGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 25736 0.69 0.56701
Target:  5'- aCGAgAAGcGGCGGcGGGcGGCGGCgGCAc -3'
miRNA:   3'- aGUUgUUC-CCGCC-CCU-UCGUCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 17789 0.69 0.56701
Target:  5'- uUCGGCGGGGcuuugcucggccGCGGGG-GGCgaGGCCGCc -3'
miRNA:   3'- -AGUUGUUCC------------CGCCCCuUCG--UCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 86633 0.69 0.618049
Target:  5'- -aAGCGuguGGGCGGGccgcgccgccccGGAGCGcGCCGCGc -3'
miRNA:   3'- agUUGUu--CCCGCCC------------CUUCGU-CGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 14441 0.69 0.618049
Target:  5'- cUCGACGGcGcCGGGGugcGCGGCCGCGg -3'
miRNA:   3'- -AGUUGUUcCcGCCCCuu-CGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 14156 0.69 0.618049
Target:  5'- --cGCAGcGGCGGccGggGCGGCCGCGc -3'
miRNA:   3'- aguUGUUcCCGCCc-CuuCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 29875 0.69 0.618049
Target:  5'- -gGACGGGGaCGGGGAcggcgaGGCGGCgGCc -3'
miRNA:   3'- agUUGUUCCcGCCCCU------UCGUCGgCGu -5'
6494 5' -58.2 NC_001847.1 + 7427 0.69 0.618049
Target:  5'- -gGGgGGGGGgGGGGGcguacuugcAGCGGcCCGCAc -3'
miRNA:   3'- agUUgUUCCCgCCCCU---------UCGUC-GGCGU- -5'
6494 5' -58.2 NC_001847.1 + 22119 0.69 0.61497
Target:  5'- aCAGCGGGcgcgcccugggcccGGCGGcGGcGGCGGCgCGCAa -3'
miRNA:   3'- aGUUGUUC--------------CCGCC-CCuUCGUCG-GCGU- -5'
6494 5' -58.2 NC_001847.1 + 120920 0.69 0.60779
Target:  5'- gCAuACGAGGGCGGGGcgggcgcGCGGgCGUg -3'
miRNA:   3'- aGU-UGUUCCCGCCCCuu-----CGUCgGCGu -5'
6494 5' -58.2 NC_001847.1 + 68043 0.69 0.601643
Target:  5'- gCAACAgcgacggcgaaggggAGGGagaaGGGGAAGCuggAGCCgGCAc -3'
miRNA:   3'- aGUUGU---------------UCCCg---CCCCUUCG---UCGG-CGU- -5'
6494 5' -58.2 NC_001847.1 + 2323 0.69 0.597549
Target:  5'- cCAGCAcgcGGGCGGGc-AGCGGCgGCu -3'
miRNA:   3'- aGUUGUu--CCCGCCCcuUCGUCGgCGu -5'
6494 5' -58.2 NC_001847.1 + 109265 0.69 0.597549
Target:  5'- gUCGGCAGGGGCGggcugcaagcgaGGGggGCgAGCaagaugGCGa -3'
miRNA:   3'- -AGUUGUUCCCGC------------CCCuuCG-UCGg-----CGU- -5'
6494 5' -58.2 NC_001847.1 + 79528 0.69 0.597549
Target:  5'- gCGGCGucgucgccgucGGGGcCGGGGggGCuggGGCuCGCGg -3'
miRNA:   3'- aGUUGU-----------UCCC-GCCCCuuCG---UCG-GCGU- -5'
6494 5' -58.2 NC_001847.1 + 63939 0.69 0.587335
Target:  5'- cCAGCGcGGccGCGGGGGcAGCAGCgCGUg -3'
miRNA:   3'- aGUUGUuCC--CGCCCCU-UCGUCG-GCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.