miRNA display CGI


Results 141 - 160 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6494 5' -58.2 NC_001847.1 + 17789 0.69 0.56701
Target:  5'- uUCGGCGGGGcuuugcucggccGCGGGG-GGCgaGGCCGCc -3'
miRNA:   3'- -AGUUGUUCC------------CGCCCCuUCG--UCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 25736 0.69 0.56701
Target:  5'- aCGAgAAGcGGCGGcGGGcGGCGGCgGCAc -3'
miRNA:   3'- aGUUgUUC-CCGCC-CCU-UCGUCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 66500 0.69 0.577153
Target:  5'- gUCGGCcagcGGcGCGGuGGAGGCGcGCCGCc -3'
miRNA:   3'- -AGUUGuu--CC-CGCC-CCUUCGU-CGGCGu -5'
6494 5' -58.2 NC_001847.1 + 102070 0.69 0.587335
Target:  5'- gCAGCAAGGGCaGGc--GCGGgCCGCGc -3'
miRNA:   3'- aGUUGUUCCCGcCCcuuCGUC-GGCGU- -5'
6494 5' -58.2 NC_001847.1 + 96852 0.69 0.587335
Target:  5'- gCGuCGGGGGCGGcGGugggcGGCGGuCCGCGc -3'
miRNA:   3'- aGUuGUUCCCGCC-CCu----UCGUC-GGCGU- -5'
6494 5' -58.2 NC_001847.1 + 69 0.69 0.597549
Target:  5'- -gGGCGGGGGCGGGGuGGgGGaugggCGCGg -3'
miRNA:   3'- agUUGUUCCCGCCCCuUCgUCg----GCGU- -5'
6494 5' -58.2 NC_001847.1 + 52800 0.69 0.597549
Target:  5'- gCGACAuGGGCGGGGcuauaGGUCGCu -3'
miRNA:   3'- aGUUGUuCCCGCCCCuucg-UCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 27522 0.69 0.601643
Target:  5'- gCGGCGGcGGCGGGGAcgcccgagaacGGCggcgcggcggcugggAGCCGCAu -3'
miRNA:   3'- aGUUGUUcCCGCCCCU-----------UCG---------------UCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 94911 0.69 0.604716
Target:  5'- cCAGCcGGGGCuGGGGGuggaaaaauGGCugcaggccaacucgGGCCGCAu -3'
miRNA:   3'- aGUUGuUCCCG-CCCCU---------UCG--------------UCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 109644 0.68 0.669344
Target:  5'- aUAACAAaagcggggaguuGGGgGGGGggGCGG-CGCu -3'
miRNA:   3'- aGUUGUU------------CCCgCCCCuuCGUCgGCGu -5'
6494 5' -58.2 NC_001847.1 + 34652 0.68 0.669344
Target:  5'- ---cCGAGcGGCGcgccgaGGggGCGGCCGCGc -3'
miRNA:   3'- aguuGUUC-CCGCc-----CCuuCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 125233 0.68 0.677508
Target:  5'- gUCcGCGGGGGCGGGGcccgagaccacGCGGUCGg- -3'
miRNA:   3'- -AGuUGUUCCCGCCCCuu---------CGUCGGCgu -5'
6494 5' -58.2 NC_001847.1 + 119028 0.68 0.679546
Target:  5'- gCAGguGGGGCGcacgcuguGGGAAGCGGUaCGCc -3'
miRNA:   3'- aGUUguUCCCGC--------CCCUUCGUCG-GCGu -5'
6494 5' -58.2 NC_001847.1 + 30427 0.68 0.669344
Target:  5'- cUCGugGcGGGCGcGGAGGCgccggGGCUGCAc -3'
miRNA:   3'- -AGUugUuCCCGCcCCUUCG-----UCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 98820 0.68 0.679546
Target:  5'- gCGGCAGGacgcacccucgcGGCGGcGGuGGCAGCgGCGc -3'
miRNA:   3'- aGUUGUUC------------CCGCC-CCuUCGUCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 17055 0.68 0.669344
Target:  5'- gCAGCucGGGCGGGcGGuaaacGGCcggcgugccAGCCGCGu -3'
miRNA:   3'- aGUUGuuCCCGCCC-CU-----UCG---------UCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 132192 0.68 0.659112
Target:  5'- gCGcCGA-GGCGGccgccgcgcuGGAGGCGGCCGCGc -3'
miRNA:   3'- aGUuGUUcCCGCC----------CCUUCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 113545 0.68 0.659112
Target:  5'- cCAGCGaguuuaggGGGGCGGGGccccGCGGCCc-- -3'
miRNA:   3'- aGUUGU--------UCCCGCCCCuu--CGUCGGcgu -5'
6494 5' -58.2 NC_001847.1 + 111428 0.68 0.659112
Target:  5'- cUCGGcCGGGGGCGGGGgGAGgAG-CGCc -3'
miRNA:   3'- -AGUU-GUUCCCGCCCC-UUCgUCgGCGu -5'
6494 5' -58.2 NC_001847.1 + 16981 0.68 0.659112
Target:  5'- cCAGCGcAGGGagacgcgccccuCGGGGAcGCAGCgCGCc -3'
miRNA:   3'- aGUUGU-UCCC------------GCCCCUuCGUCG-GCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.