miRNA display CGI


Results 61 - 80 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6494 5' -58.2 NC_001847.1 + 32073 0.72 0.413711
Target:  5'- aCGGCGGGGGCcggggaagauuggGGGGAGgggggaaacGCGGCUGCGg -3'
miRNA:   3'- aGUUGUUCCCG-------------CCCCUU---------CGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 128798 0.72 0.414586
Target:  5'- -aGACcAGGGCGGGcGGGCGGgCGCGc -3'
miRNA:   3'- agUUGuUCCCGCCCcUUCGUCgGCGU- -5'
6494 5' -58.2 NC_001847.1 + 73158 0.72 0.414586
Target:  5'- gCGGCGcgccGGGCGGaGGAGGCGGaCGCGg -3'
miRNA:   3'- aGUUGUu---CCCGCC-CCUUCGUCgGCGU- -5'
6494 5' -58.2 NC_001847.1 + 25985 0.72 0.414586
Target:  5'- -aGACcAGGGCGGGcGGGCGGgCGCGc -3'
miRNA:   3'- agUUGuUCCCGCCCcUUCGUCgGCGU- -5'
6494 5' -58.2 NC_001847.1 + 69614 0.72 0.423396
Target:  5'- -aAACGAGcGGCGcGGccGGGCGGCCGCAc -3'
miRNA:   3'- agUUGUUC-CCGCcCC--UUCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 127354 0.72 0.432316
Target:  5'- gCGGCAGGGGCGGcGggGCccgAGCCucgGCAc -3'
miRNA:   3'- aGUUGUUCCCGCCcCuuCG---UCGG---CGU- -5'
6494 5' -58.2 NC_001847.1 + 10102 0.72 0.432316
Target:  5'- --cACAAGcGGCGGGGAA--AGCCGCc -3'
miRNA:   3'- aguUGUUC-CCGCCCCUUcgUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 95356 0.72 0.441346
Target:  5'- gUCGACu--GGCGGGGGcuggcGGCGGaCCGCGc -3'
miRNA:   3'- -AGUUGuucCCGCCCCU-----UCGUC-GGCGU- -5'
6494 5' -58.2 NC_001847.1 + 26848 0.72 0.441346
Target:  5'- aCAAgaaaGAGGcGCGGGGAAaggagagagacGCGGCCGCc -3'
miRNA:   3'- aGUUg---UUCC-CGCCCCUU-----------CGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 129661 0.72 0.441346
Target:  5'- aCAAgaaaGAGGcGCGGGGAAaggagagagacGCGGCCGCc -3'
miRNA:   3'- aGUUg---UUCC-CGCCCCUU-----------CGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 103264 0.71 0.450481
Target:  5'- gCAGCAGcGGCGGcGGcGGCGGCgGCGg -3'
miRNA:   3'- aGUUGUUcCCGCC-CCuUCGUCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 451 0.71 0.450481
Target:  5'- gCAGCAGcGGCGGcGGcGGCGGCgGCGg -3'
miRNA:   3'- aGUUGUUcCCGCC-CCuUCGUCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 3972 0.71 0.459719
Target:  5'- gCGGCGAGGGCGccGGggGCcgGGCgCGCGg -3'
miRNA:   3'- aGUUGUUCCCGCc-CCuuCG--UCG-GCGU- -5'
6494 5' -58.2 NC_001847.1 + 71445 0.71 0.459719
Target:  5'- aCGACGAgguuggccccGGGCgcuuccGGGGGcauGGCGGCCGCGa -3'
miRNA:   3'- aGUUGUU----------CCCG------CCCCU---UCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 59551 0.71 0.459719
Target:  5'- gCggUggGGGCGGcGGggGCGguGCCgGCGg -3'
miRNA:   3'- aGuuGuuCCCGCC-CCuuCGU--CGG-CGU- -5'
6494 5' -58.2 NC_001847.1 + 34414 0.71 0.459719
Target:  5'- gCGGCGcugGGGGCGGcGGAAGaaguacuucgGGCCGCGg -3'
miRNA:   3'- aGUUGU---UCCCGCC-CCUUCg---------UCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 134630 0.71 0.469057
Target:  5'- aCAGCGuGGGCuGGGGGcgggccggcAGCAGgCGCGg -3'
miRNA:   3'- aGUUGUuCCCG-CCCCU---------UCGUCgGCGU- -5'
6494 5' -58.2 NC_001847.1 + 7725 0.71 0.469057
Target:  5'- uUCAggcGCAGGGcGCGGgcgcGGAGGCGGCgGCc -3'
miRNA:   3'- -AGU---UGUUCC-CGCC----CCUUCGUCGgCGu -5'
6494 5' -58.2 NC_001847.1 + 72684 0.71 0.469057
Target:  5'- cCGGCccugcuGAGGcCGGGGAgAGCGGCCGCc -3'
miRNA:   3'- aGUUG------UUCCcGCCCCU-UCGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 6952 0.71 0.478491
Target:  5'- -gGGCcAGGcGCGGGGucGCGGCgGCGc -3'
miRNA:   3'- agUUGuUCC-CGCCCCuuCGUCGgCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.