miRNA display CGI


Results 81 - 100 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6494 5' -58.2 NC_001847.1 + 6952 0.71 0.478491
Target:  5'- -gGGCcAGGcGCGGGGucGCGGCgGCGc -3'
miRNA:   3'- agUUGuUCC-CGCCCCuuCGUCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 67180 0.71 0.488017
Target:  5'- gUCGACAAGGGCGcgcaGGuAGCAcacGCCGUg -3'
miRNA:   3'- -AGUUGUUCCCGCc---CCuUCGU---CGGCGu -5'
6494 5' -58.2 NC_001847.1 + 33503 0.71 0.488017
Target:  5'- gCGGCGcGGGCGGcGGcGGGCGccGCCGCGg -3'
miRNA:   3'- aGUUGUuCCCGCC-CC-UUCGU--CGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 32939 0.71 0.488017
Target:  5'- cCGGCGgcGGGGcCGGGGggGCggaggaGGCCGgGg -3'
miRNA:   3'- aGUUGU--UCCC-GCCCCuuCG------UCGGCgU- -5'
6494 5' -58.2 NC_001847.1 + 132666 0.71 0.488017
Target:  5'- uUCAcACGGcGGCGGGGgcGCcGCCGCc -3'
miRNA:   3'- -AGU-UGUUcCCGCCCCuuCGuCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 32982 0.71 0.488017
Target:  5'- -aGGCGccGGGGCGGGcagggcggccGGAGCGGCCGgGg -3'
miRNA:   3'- agUUGU--UCCCGCCC----------CUUCGUCGGCgU- -5'
6494 5' -58.2 NC_001847.1 + 17889 0.71 0.488017
Target:  5'- ------cGGGCGGGGcGGGCGGCgGCGu -3'
miRNA:   3'- aguuguuCCCGCCCC-UUCGUCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 127214 0.71 0.496667
Target:  5'- --cGCAAGcugcaaaacGGCGGGGGaagaagcGGCGGCCGCc -3'
miRNA:   3'- aguUGUUC---------CCGCCCCU-------UCGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 59347 0.71 0.497632
Target:  5'- cCGGCAucgGGGGCGGaGcGGCGGCgGCAg -3'
miRNA:   3'- aGUUGU---UCCCGCCcCuUCGUCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 4976 0.71 0.497632
Target:  5'- ----gGGGGGCagcuGGGGugcGGCGGCCGCGg -3'
miRNA:   3'- aguugUUCCCG----CCCCu--UCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 38420 0.7 0.506357
Target:  5'- uUCGccGCAGGGGCGGGagcccgaGggGCGGgcaUCGCAg -3'
miRNA:   3'- -AGU--UGUUCCCGCCC-------CuuCGUC---GGCGU- -5'
6494 5' -58.2 NC_001847.1 + 419 0.7 0.50733
Target:  5'- -gGGCccGGGGCGGGcGGGCGGCgGCGg -3'
miRNA:   3'- agUUGu-UCCCGCCCcUUCGUCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 103232 0.7 0.50733
Target:  5'- -gGGCccGGGGCGGGcGGGCGGCgGCGg -3'
miRNA:   3'- agUUGu-UCCCGCCCcUUCGUCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 41371 0.7 0.517109
Target:  5'- cCAGcCAAGcGGCGGccGGGccgccgccGGCAGCCGCGc -3'
miRNA:   3'- aGUU-GUUC-CCGCC--CCU--------UCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 48071 0.7 0.517109
Target:  5'- --cGCGAaaGGCGGGGgcGCAcGCCGCGc -3'
miRNA:   3'- aguUGUUc-CCGCCCCuuCGU-CGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 29105 0.7 0.517109
Target:  5'- aCGGCGcGGGCGGcGcGcGAGCGGCUGCGc -3'
miRNA:   3'- aGUUGUuCCCGCC-C-C-UUCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 53615 0.7 0.517109
Target:  5'- -uGGCGGGcGGCGGGGuGGCA-CCGCc -3'
miRNA:   3'- agUUGUUC-CCGCCCCuUCGUcGGCGu -5'
6494 5' -58.2 NC_001847.1 + 83266 0.7 0.517109
Target:  5'- gCGGCGGGGGCGGGc--GCAGaggCGCAc -3'
miRNA:   3'- aGUUGUUCCCGCCCcuuCGUCg--GCGU- -5'
6494 5' -58.2 NC_001847.1 + 99795 0.7 0.517109
Target:  5'- gCAGCGccuguGGuGCGGGGucgGAGCGGCCGgGg -3'
miRNA:   3'- aGUUGUu----CC-CGCCCC---UUCGUCGGCgU- -5'
6494 5' -58.2 NC_001847.1 + 131918 0.7 0.517109
Target:  5'- aCGGCGcGGGCGGcGcGcGAGCGGCUGCGc -3'
miRNA:   3'- aGUUGUuCCCGCC-C-C-UUCGUCGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.