miRNA display CGI


Results 101 - 120 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6494 5' -58.2 NC_001847.1 + 56817 0.7 0.525973
Target:  5'- cCGGCGcgccuggGGGcGCGGGGAGGgggcggccCAGCCGCc -3'
miRNA:   3'- aGUUGU-------UCC-CGCCCCUUC--------GUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 124645 0.7 0.525973
Target:  5'- gCAGCAgcgcGGGGCcgucGGGGAAGCccagcucGGCCuGCAu -3'
miRNA:   3'- aGUUGU----UCCCG----CCCCUUCG-------UCGG-CGU- -5'
6494 5' -58.2 NC_001847.1 + 70699 0.7 0.526961
Target:  5'- --cGCGGGcGGCGGcGGggGCGcCCGCGg -3'
miRNA:   3'- aguUGUUC-CCGCC-CCuuCGUcGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 74977 0.7 0.526961
Target:  5'- aCAGCGacGGGGCGGGGcgccAGGCucAGuCCGCc -3'
miRNA:   3'- aGUUGU--UCCCGCCCC----UUCG--UC-GGCGu -5'
6494 5' -58.2 NC_001847.1 + 130204 0.7 0.536883
Target:  5'- aUAGCGAGGuugcuCGGGGggGCGcuguuGCCGCc -3'
miRNA:   3'- aGUUGUUCCc----GCCCCuuCGU-----CGGCGu -5'
6494 5' -58.2 NC_001847.1 + 27391 0.7 0.536883
Target:  5'- aUAGCGAGGuugcuCGGGGggGCGcuguuGCCGCc -3'
miRNA:   3'- aGUUGUUCCc----GCCCCuuCGU-----CGGCGu -5'
6494 5' -58.2 NC_001847.1 + 17586 0.7 0.536883
Target:  5'- gCAGCAcGGGCGGGGcccgcggaAAGgGGuuGCGc -3'
miRNA:   3'- aGUUGUuCCCGCCCC--------UUCgUCggCGU- -5'
6494 5' -58.2 NC_001847.1 + 123504 0.7 0.536883
Target:  5'- -aAGCGGGGcCGGGGccaGGGCuGCCGCGg -3'
miRNA:   3'- agUUGUUCCcGCCCC---UUCGuCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 66255 0.7 0.546869
Target:  5'- cUCGGCAugcuGGGcCGGGGAGGCcucuucGGCCcgGCGc -3'
miRNA:   3'- -AGUUGUu---CCC-GCCCCUUCG------UCGG--CGU- -5'
6494 5' -58.2 NC_001847.1 + 95949 0.7 0.546869
Target:  5'- -gAACGcuGGCGGGcGAgcgugagcgcAGCAGCCGCu -3'
miRNA:   3'- agUUGUucCCGCCC-CU----------UCGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 53855 0.7 0.556913
Target:  5'- --cGCGGGGGUcaGGGGGugcuguggGGCGGCCGUc -3'
miRNA:   3'- aguUGUUCCCG--CCCCU--------UCGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 25915 0.7 0.556913
Target:  5'- --uGCGAGGGgGaGGGggGUgguGGCCGUg -3'
miRNA:   3'- aguUGUUCCCgC-CCCuuCG---UCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 103617 0.7 0.556913
Target:  5'- cCGACGAGG-CGGGGGA-CGacGCCGCGg -3'
miRNA:   3'- aGUUGUUCCcGCCCCUUcGU--CGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 804 0.7 0.556913
Target:  5'- cCGACGAGG-CGGGGGA-CGacGCCGCGg -3'
miRNA:   3'- aGUUGUUCCcGCCCCUUcGU--CGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 119522 0.7 0.556913
Target:  5'- ----gAGGGGCGGcGGccGCGGCCgGCAg -3'
miRNA:   3'- aguugUUCCCGCC-CCuuCGUCGG-CGU- -5'
6494 5' -58.2 NC_001847.1 + 25736 0.69 0.56701
Target:  5'- aCGAgAAGcGGCGGcGGGcGGCGGCgGCAc -3'
miRNA:   3'- aGUUgUUC-CCGCC-CCU-UCGUCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 17789 0.69 0.56701
Target:  5'- uUCGGCGGGGcuuugcucggccGCGGGG-GGCgaGGCCGCc -3'
miRNA:   3'- -AGUUGUUCC------------CGCCCCuUCG--UCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 21859 0.69 0.56701
Target:  5'- gCAGCAGguGGuGCGGGGGcuGCGGCgCGCu -3'
miRNA:   3'- aGUUGUU--CC-CGCCCCUu-CGUCG-GCGu -5'
6494 5' -58.2 NC_001847.1 + 46904 0.69 0.574105
Target:  5'- uUCAGCGAGGcuuCGGGGGgcgcgucgggcccgGGCuccgGGCCGCGu -3'
miRNA:   3'- -AGUUGUUCCc--GCCCCU--------------UCG----UCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 66500 0.69 0.577153
Target:  5'- gUCGGCcagcGGcGCGGuGGAGGCGcGCCGCc -3'
miRNA:   3'- -AGUUGuu--CC-CGCC-CCUUCGU-CGGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.