miRNA display CGI


Results 141 - 160 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6494 5' -58.2 NC_001847.1 + 132688 0.69 0.618049
Target:  5'- -gGACGGGGaCGGGGAcggcgaGGCGGCgGCc -3'
miRNA:   3'- agUUGUUCCcGCCCCU------UCGUCGgCGu -5'
6494 5' -58.2 NC_001847.1 + 110240 0.69 0.618049
Target:  5'- -gGGgGGGGGgGGGGGcguacuugcAGCGGcCCGCAc -3'
miRNA:   3'- agUUgUUCCCgCCCCU---------UCGUC-GGCGU- -5'
6494 5' -58.2 NC_001847.1 + 14441 0.69 0.618049
Target:  5'- cUCGACGGcGcCGGGGugcGCGGCCGCGg -3'
miRNA:   3'- -AGUUGUUcCcGCCCCuu-CGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 86633 0.69 0.618049
Target:  5'- -aAGCGuguGGGCGGGccgcgccgccccGGAGCGcGCCGCGc -3'
miRNA:   3'- agUUGUu--CCCGCCC------------CUUCGU-CGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 9235 0.69 0.618049
Target:  5'- --cGCGGGGGCGGGGcuGauuGaCCGCAa -3'
miRNA:   3'- aguUGUUCCCGCCCCuuCgu-C-GGCGU- -5'
6494 5' -58.2 NC_001847.1 + 54515 0.69 0.618049
Target:  5'- -gGugGGGGGCGGuGggGCggGGCCGUc -3'
miRNA:   3'- agUugUUCCCGCCcCuuCG--UCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 29875 0.69 0.618049
Target:  5'- -gGACGGGGaCGGGGAcggcgaGGCGGCgGCc -3'
miRNA:   3'- agUUGUUCCcGCCCCU------UCGUCGgCGu -5'
6494 5' -58.2 NC_001847.1 + 14156 0.69 0.618049
Target:  5'- --cGCAGcGGCGGccGggGCGGCCGCGc -3'
miRNA:   3'- aguUGUUcCCGCCc-CuuCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 96515 0.69 0.622156
Target:  5'- uUCGACGAguGGGCGGcaacGGAccgcgcgcgccggcuGuGCAGCCGCGc -3'
miRNA:   3'- -AGUUGUU--CCCGCC----CCU---------------U-CGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 76415 0.68 0.627291
Target:  5'- gCGGCGGGGGCaccccgcGGcGGGAGCGcGCgCGCGg -3'
miRNA:   3'- aGUUGUUCCCG-------CC-CCUUCGU-CG-GCGU- -5'
6494 5' -58.2 NC_001847.1 + 46628 0.68 0.628318
Target:  5'- --uACGAGGGCGaacuuGGcGucGCAGCCGCc -3'
miRNA:   3'- aguUGUUCCCGC-----CC-CuuCGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 7734 0.68 0.628318
Target:  5'- aUCGGCGAGGGUcgaucgauuaacGGGGcgcauauGCGGCCGg- -3'
miRNA:   3'- -AGUUGUUCCCG------------CCCCuu-----CGUCGGCgu -5'
6494 5' -58.2 NC_001847.1 + 17714 0.68 0.628318
Target:  5'- cCAA-GAGGGCcaGGgcGCAGCCGCGc -3'
miRNA:   3'- aGUUgUUCCCGccCCuuCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 20661 0.68 0.628318
Target:  5'- cUCAGC-AGGGCGGaGAcguccgccagcuGGCGGCCGa- -3'
miRNA:   3'- -AGUUGuUCCCGCCcCU------------UCGUCGGCgu -5'
6494 5' -58.2 NC_001847.1 + 110547 0.68 0.628318
Target:  5'- aUCGGCGAGGGUcgaucgauuaacGGGGcgcauauGCGGCCGg- -3'
miRNA:   3'- -AGUUGUUCCCG------------CCCCuu-----CGUCGGCgu -5'
6494 5' -58.2 NC_001847.1 + 53932 0.68 0.628318
Target:  5'- aCGGCGAcGGCGGcucugugcGcGAGGCGGCCGCc -3'
miRNA:   3'- aGUUGUUcCCGCC--------C-CUUCGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 38166 0.68 0.628318
Target:  5'- ---cCGAGGGaccGGAAGCGGCCGUAc -3'
miRNA:   3'- aguuGUUCCCgccCCUUCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 115557 0.68 0.628318
Target:  5'- -gGAUcGGGGCGGGGAGGgGGgCGa- -3'
miRNA:   3'- agUUGuUCCCGCCCCUUCgUCgGCgu -5'
6494 5' -58.2 NC_001847.1 + 21725 0.68 0.63859
Target:  5'- cCAGCAGGGcGCGGGccGGCgccGGcCCGCGc -3'
miRNA:   3'- aGUUGUUCC-CGCCCcuUCG---UC-GGCGU- -5'
6494 5' -58.2 NC_001847.1 + 34421 0.68 0.63859
Target:  5'- cUCGGCGcagaAGaGGCGGcgcaccgaaauGGAAGUGGCCGCc -3'
miRNA:   3'- -AGUUGU----UC-CCGCC-----------CCUUCGUCGGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.