Results 161 - 180 of 313 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6494 | 5' | -58.2 | NC_001847.1 | + | 29291 | 0.68 | 0.63859 |
Target: 5'- gCGGCGcuGGCGGcagaGGccGCGGCCGCGg -3' miRNA: 3'- aGUUGUucCCGCC----CCuuCGUCGGCGU- -5' |
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6494 | 5' | -58.2 | NC_001847.1 | + | 21725 | 0.68 | 0.63859 |
Target: 5'- cCAGCAGGGcGCGGGccGGCgccGGcCCGCGc -3' miRNA: 3'- aGUUGUUCC-CGCCCcuUCG---UC-GGCGU- -5' |
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6494 | 5' | -58.2 | NC_001847.1 | + | 76728 | 0.68 | 0.63859 |
Target: 5'- -gGACGGucGGGCGGGGAAGgaCGGUCGg- -3' miRNA: 3'- agUUGUU--CCCGCCCCUUC--GUCGGCgu -5' |
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6494 | 5' | -58.2 | NC_001847.1 | + | 128728 | 0.68 | 0.63859 |
Target: 5'- --uGCGAGGGggaGGGGGuGGUGGCCGUg -3' miRNA: 3'- aguUGUUCCCg--CCCCU-UCGUCGGCGu -5' |
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6494 | 5' | -58.2 | NC_001847.1 | + | 74640 | 0.68 | 0.63859 |
Target: 5'- cUCGcGCGA-GGCGGGGcAGCuGCUGCGc -3' miRNA: 3'- -AGU-UGUUcCCGCCCCuUCGuCGGCGU- -5' |
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6494 | 5' | -58.2 | NC_001847.1 | + | 124538 | 0.68 | 0.63859 |
Target: 5'- cCAGCAGGGcGCGGGccGGCgccGGcCCGCGc -3' miRNA: 3'- aGUUGUUCC-CGCCCcuUCG---UC-GGCGU- -5' |
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6494 | 5' | -58.2 | NC_001847.1 | + | 95352 | 0.68 | 0.648858 |
Target: 5'- gCAGCcaGGGGaGCGGGGccAGGCGG-CGCAa -3' miRNA: 3'- aGUUG--UUCC-CGCCCC--UUCGUCgGCGU- -5' |
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6494 | 5' | -58.2 | NC_001847.1 | + | 71863 | 0.68 | 0.648858 |
Target: 5'- --------aGCGGuGGAAGCGGCCGCGa -3' miRNA: 3'- aguuguuccCGCC-CCUUCGUCGGCGU- -5' |
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6494 | 5' | -58.2 | NC_001847.1 | + | 61451 | 0.68 | 0.648858 |
Target: 5'- ------cGGGCGcGGcGAGGCGGUCGCGc -3' miRNA: 3'- aguuguuCCCGC-CC-CUUCGUCGGCGU- -5' |
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6494 | 5' | -58.2 | NC_001847.1 | + | 35913 | 0.68 | 0.648858 |
Target: 5'- aCAACGAGcGGCauGGAccGGCGGUCGCGc -3' miRNA: 3'- aGUUGUUC-CCGccCCU--UCGUCGGCGU- -5' |
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6494 | 5' | -58.2 | NC_001847.1 | + | 115861 | 0.68 | 0.648858 |
Target: 5'- aCAACGAGGGacCGGaGGucGC-GCCGCc -3' miRNA: 3'- aGUUGUUCCC--GCC-CCuuCGuCGGCGu -5' |
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6494 | 5' | -58.2 | NC_001847.1 | + | 13115 | 0.68 | 0.648858 |
Target: 5'- gCGGCcGGGGCGcgcGGGcGGC-GCCGCGc -3' miRNA: 3'- aGUUGuUCCCGC---CCCuUCGuCGGCGU- -5' |
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6494 | 5' | -58.2 | NC_001847.1 | + | 101443 | 0.68 | 0.648858 |
Target: 5'- -gAGCuggGGGGCGcGGAAacugccgccgcGCGGCCGCAa -3' miRNA: 3'- agUUGu--UCCCGCcCCUU-----------CGUCGGCGU- -5' |
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6494 | 5' | -58.2 | NC_001847.1 | + | 101094 | 0.68 | 0.648858 |
Target: 5'- gUCGGC-GGGGCGGGcGGGCGcguucGCCGUc -3' miRNA: 3'- -AGUUGuUCCCGCCCcUUCGU-----CGGCGu -5' |
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6494 | 5' | -58.2 | NC_001847.1 | + | 27719 | 0.68 | 0.648858 |
Target: 5'- -gGGCAAGGGCgucagcGGcGGAAGCcGCgGCGg -3' miRNA: 3'- agUUGUUCCCG------CC-CCUUCGuCGgCGU- -5' |
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6494 | 5' | -58.2 | NC_001847.1 | + | 42589 | 0.68 | 0.658087 |
Target: 5'- -gGACGAGGaCGGGGGuggugacagggacGGCGccGCCGCGg -3' miRNA: 3'- agUUGUUCCcGCCCCU-------------UCGU--CGGCGU- -5' |
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6494 | 5' | -58.2 | NC_001847.1 | + | 132192 | 0.68 | 0.659112 |
Target: 5'- gCGcCGA-GGCGGccgccgcgcuGGAGGCGGCCGCGc -3' miRNA: 3'- aGUuGUUcCCGCC----------CCUUCGUCGGCGU- -5' |
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6494 | 5' | -58.2 | NC_001847.1 | + | 10732 | 0.68 | 0.659112 |
Target: 5'- cCAGCGaguuuaggGGGGCGGGGccccGCGGCCc-- -3' miRNA: 3'- aGUUGU--------UCCCGCCCCuu--CGUCGGcgu -5' |
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6494 | 5' | -58.2 | NC_001847.1 | + | 111428 | 0.68 | 0.659112 |
Target: 5'- cUCGGcCGGGGGCGGGGgGAGgAG-CGCc -3' miRNA: 3'- -AGUU-GUUCCCGCCCC-UUCgUCgGCGu -5' |
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6494 | 5' | -58.2 | NC_001847.1 | + | 113545 | 0.68 | 0.659112 |
Target: 5'- cCAGCGaguuuaggGGGGCGGGGccccGCGGCCc-- -3' miRNA: 3'- aGUUGU--------UCCCGCCCCuu--CGUCGGcgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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