miRNA display CGI


Results 81 - 100 of 313 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6494 5' -58.2 NC_001847.1 + 37145 0.67 0.718874
Target:  5'- cCAGCGggccuuuGGGGCGgccGGGAAGCGGCaccuCGUg -3'
miRNA:   3'- aGUUGU-------UCCCGC---CCCUUCGUCG----GCGu -5'
6494 5' -58.2 NC_001847.1 + 35304 0.67 0.71688
Target:  5'- -gGGCGGGGGCGGGcaacgcaAAGCacuaagcggcccccGGCCGCu -3'
miRNA:   3'- agUUGUUCCCGCCCc------UUCG--------------UCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 106790 0.67 0.709879
Target:  5'- gCAGCAGcGGGCGGauGA-CGGCCGCGc -3'
miRNA:   3'- aGUUGUU-CCCGCCccUUcGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 15331 0.67 0.709879
Target:  5'- gUAGCGGGGGCGGgcGGggGguGC-GUg -3'
miRNA:   3'- aGUUGUUCCCGCC--CCuuCguCGgCGu -5'
6494 5' -58.2 NC_001847.1 + 43455 0.67 0.709879
Target:  5'- -gAGCGAa-GCGGGaGccGCAGCCGCAg -3'
miRNA:   3'- agUUGUUccCGCCC-CuuCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 116440 0.67 0.709879
Target:  5'- ---uCGAGGGCGGuGGgcGCuGgCGCAc -3'
miRNA:   3'- aguuGUUCCCGCC-CCuuCGuCgGCGU- -5'
6494 5' -58.2 NC_001847.1 + 108355 0.67 0.709879
Target:  5'- cUCGcACcGGcGGCGGcGGcAGCAGCgGCAg -3'
miRNA:   3'- -AGU-UGuUC-CCGCC-CCuUCGUCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 122015 0.67 0.709879
Target:  5'- gCGACcGGGGUGcuGAucGCGGCCGCAg -3'
miRNA:   3'- aGUUGuUCCCGCccCUu-CGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 56143 0.67 0.709879
Target:  5'- gCAGCcuccGGGGUGGcucAGCAGCCGCc -3'
miRNA:   3'- aGUUGu---UCCCGCCccuUCGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 5542 0.67 0.709879
Target:  5'- cUCGcACcGGcGGCGGcGGcAGCAGCgGCAg -3'
miRNA:   3'- -AGU-UGuUC-CCGCC-CCuUCGUCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 58860 0.67 0.708876
Target:  5'- --cGCAccuacccGGGGCGGGGcAGGUAcuGCUGCGg -3'
miRNA:   3'- aguUGU-------UCCCGCCCC-UUCGU--CGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 93221 0.67 0.703852
Target:  5'- aCGGCGAGGGCGaGGGcgaggguucuucccgGAGUcuuauGGcCCGCAu -3'
miRNA:   3'- aGUUGUUCCCGC-CCC---------------UUCG-----UC-GGCGU- -5'
6494 5' -58.2 NC_001847.1 + 132796 0.67 0.699822
Target:  5'- gCGGCcGGGccggcGCGGcGGGAGCcGCCGCu -3'
miRNA:   3'- aGUUGuUCC-----CGCC-CCUUCGuCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 131026 0.67 0.699822
Target:  5'- aCGAUggGGGCGaggcccgggaGGGGAGCAccgacGCCGaCGc -3'
miRNA:   3'- aGUUGuuCCCGC----------CCCUUCGU-----CGGC-GU- -5'
6494 5' -58.2 NC_001847.1 + 101148 0.67 0.699822
Target:  5'- --cGCGGGGGCuGGGGccGgGGCCGgGg -3'
miRNA:   3'- aguUGUUCCCG-CCCCuuCgUCGGCgU- -5'
6494 5' -58.2 NC_001847.1 + 35970 0.67 0.699822
Target:  5'- aCcACGAGGGCGccaaGGcgcgcGCAGCCGCGc -3'
miRNA:   3'- aGuUGUUCCCGCc---CCuu---CGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 31298 0.67 0.699822
Target:  5'- -aGGCGGGcGCGGGGAgcgGGCucuGCUGCGu -3'
miRNA:   3'- agUUGUUCcCGCCCCU---UCGu--CGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 20012 0.67 0.699822
Target:  5'- gCAGCGcacuuccaauAGGGCGGcccuGCGGCCGCc -3'
miRNA:   3'- aGUUGU----------UCCCGCCccuuCGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 100882 0.67 0.699822
Target:  5'- gCGGCAGGGGCGcggccggcGGGAgacggggucggGGCucggguggaaauAGCCGCGg -3'
miRNA:   3'- aGUUGUUCCCGC--------CCCU-----------UCG------------UCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 8383 0.67 0.699822
Target:  5'- gCAGCGuGGGCGucugccgcguaGGcuacGGGCAGCCGCAc -3'
miRNA:   3'- aGUUGUuCCCGC-----------CCc---UUCGUCGGCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.