miRNA display CGI


Results 121 - 140 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6494 5' -58.2 NC_001847.1 + 109644 0.68 0.669344
Target:  5'- aUAACAAaagcggggaguuGGGgGGGGggGCGG-CGCu -3'
miRNA:   3'- aGUUGUU------------CCCgCCCCuuCGUCgGCGu -5'
6494 5' -58.2 NC_001847.1 + 30427 0.68 0.669344
Target:  5'- cUCGugGcGGGCGcGGAGGCgccggGGCUGCAc -3'
miRNA:   3'- -AGUugUuCCCGCcCCUUCG-----UCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 17055 0.68 0.669344
Target:  5'- gCAGCucGGGCGGGcGGuaaacGGCcggcgugccAGCCGCGu -3'
miRNA:   3'- aGUUGuuCCCGCCC-CU-----UCG---------UCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 67506 0.68 0.669344
Target:  5'- cUCGACGAGGGCacGGucGCGGaCGCGg -3'
miRNA:   3'- -AGUUGUUCCCGccCCuuCGUCgGCGU- -5'
6494 5' -58.2 NC_001847.1 + 43654 0.68 0.669344
Target:  5'- --cGCGAGGGCucGGGuGGCccGCCGCAg -3'
miRNA:   3'- aguUGUUCCCGc-CCCuUCGu-CGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 6831 0.68 0.669344
Target:  5'- aUAACAAaagcggggaguuGGGgGGGGggGCGG-CGCu -3'
miRNA:   3'- aGUUGUU------------CCCgCCCCuuCGUCgGCGu -5'
6494 5' -58.2 NC_001847.1 + 14020 0.68 0.669344
Target:  5'- gCAGCAGGcGGCGGc---GCAGCgCGCAg -3'
miRNA:   3'- aGUUGUUC-CCGCCccuuCGUCG-GCGU- -5'
6494 5' -58.2 NC_001847.1 + 13245 0.68 0.669344
Target:  5'- cCAGCGGGGccacGCGGGcGGuucgcaGGCAGgCCGCGu -3'
miRNA:   3'- aGUUGUUCC----CGCCC-CU------UCGUC-GGCGU- -5'
6494 5' -58.2 NC_001847.1 + 34652 0.68 0.669344
Target:  5'- ---cCGAGcGGCGcgccgaGGggGCGGCCGCGc -3'
miRNA:   3'- aguuGUUC-CCGCc-----CCuuCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 113545 0.68 0.659112
Target:  5'- cCAGCGaguuuaggGGGGCGGGGccccGCGGCCc-- -3'
miRNA:   3'- aGUUGU--------UCCCGCCCCuu--CGUCGGcgu -5'
6494 5' -58.2 NC_001847.1 + 16981 0.68 0.659112
Target:  5'- cCAGCGcAGGGagacgcgccccuCGGGGAcGCAGCgCGCc -3'
miRNA:   3'- aGUUGU-UCCC------------GCCCCUuCGUCG-GCGu -5'
6494 5' -58.2 NC_001847.1 + 111428 0.68 0.659112
Target:  5'- cUCGGcCGGGGGCGGGGgGAGgAG-CGCc -3'
miRNA:   3'- -AGUU-GUUCCCGCCCC-UUCgUCgGCGu -5'
6494 5' -58.2 NC_001847.1 + 8615 0.68 0.659112
Target:  5'- cUCGGcCGGGGGCGGGGgGAGgAG-CGCc -3'
miRNA:   3'- -AGUU-GUUCCCGCCCC-UUCgUCgGCGu -5'
6494 5' -58.2 NC_001847.1 + 132192 0.68 0.659112
Target:  5'- gCGcCGA-GGCGGccgccgcgcuGGAGGCGGCCGCGc -3'
miRNA:   3'- aGUuGUUcCCGCC----------CCUUCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 10732 0.68 0.659112
Target:  5'- cCAGCGaguuuaggGGGGCGGGGccccGCGGCCc-- -3'
miRNA:   3'- aGUUGU--------UCCCGCCCCuu--CGUCGGcgu -5'
6494 5' -58.2 NC_001847.1 + 11827 0.68 0.659112
Target:  5'- aCAGCGcgcGGGgGGGGggGC-GCCuaGCGg -3'
miRNA:   3'- aGUUGUu--CCCgCCCCuuCGuCGG--CGU- -5'
6494 5' -58.2 NC_001847.1 + 29379 0.68 0.659112
Target:  5'- gCGcCGA-GGCGGccgccgcgcuGGAGGCGGCCGCGc -3'
miRNA:   3'- aGUuGUUcCCGCC----------CCUUCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 42589 0.68 0.658087
Target:  5'- -gGACGAGGaCGGGGGuggugacagggacGGCGccGCCGCGg -3'
miRNA:   3'- agUUGUUCCcGCCCCU-------------UCGU--CGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 101443 0.68 0.648858
Target:  5'- -gAGCuggGGGGCGcGGAAacugccgccgcGCGGCCGCAa -3'
miRNA:   3'- agUUGu--UCCCGCcCCUU-----------CGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 101094 0.68 0.648858
Target:  5'- gUCGGC-GGGGCGGGcGGGCGcguucGCCGUc -3'
miRNA:   3'- -AGUUGuUCCCGCCCcUUCGU-----CGGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.