Results 141 - 160 of 313 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6494 | 5' | -58.2 | NC_001847.1 | + | 27719 | 0.68 | 0.648858 |
Target: 5'- -gGGCAAGGGCgucagcGGcGGAAGCcGCgGCGg -3' miRNA: 3'- agUUGUUCCCG------CC-CCUUCGuCGgCGU- -5' |
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6494 | 5' | -58.2 | NC_001847.1 | + | 13115 | 0.68 | 0.648858 |
Target: 5'- gCGGCcGGGGCGcgcGGGcGGC-GCCGCGc -3' miRNA: 3'- aGUUGuUCCCGC---CCCuUCGuCGGCGU- -5' |
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6494 | 5' | -58.2 | NC_001847.1 | + | 95352 | 0.68 | 0.648858 |
Target: 5'- gCAGCcaGGGGaGCGGGGccAGGCGG-CGCAa -3' miRNA: 3'- aGUUG--UUCC-CGCCCC--UUCGUCgGCGU- -5' |
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6494 | 5' | -58.2 | NC_001847.1 | + | 71863 | 0.68 | 0.648858 |
Target: 5'- --------aGCGGuGGAAGCGGCCGCGa -3' miRNA: 3'- aguuguuccCGCC-CCUUCGUCGGCGU- -5' |
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6494 | 5' | -58.2 | NC_001847.1 | + | 115861 | 0.68 | 0.648858 |
Target: 5'- aCAACGAGGGacCGGaGGucGC-GCCGCc -3' miRNA: 3'- aGUUGUUCCC--GCC-CCuuCGuCGGCGu -5' |
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6494 | 5' | -58.2 | NC_001847.1 | + | 101094 | 0.68 | 0.648858 |
Target: 5'- gUCGGC-GGGGCGGGcGGGCGcguucGCCGUc -3' miRNA: 3'- -AGUUGuUCCCGCCCcUUCGU-----CGGCGu -5' |
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6494 | 5' | -58.2 | NC_001847.1 | + | 101443 | 0.68 | 0.648858 |
Target: 5'- -gAGCuggGGGGCGcGGAAacugccgccgcGCGGCCGCAa -3' miRNA: 3'- agUUGu--UCCCGCcCCUU-----------CGUCGGCGU- -5' |
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6494 | 5' | -58.2 | NC_001847.1 | + | 34421 | 0.68 | 0.63859 |
Target: 5'- cUCGGCGcagaAGaGGCGGcgcaccgaaauGGAAGUGGCCGCc -3' miRNA: 3'- -AGUUGU----UC-CCGCC-----------CCUUCGUCGGCGu -5' |
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6494 | 5' | -58.2 | NC_001847.1 | + | 124538 | 0.68 | 0.63859 |
Target: 5'- cCAGCAGGGcGCGGGccGGCgccGGcCCGCGc -3' miRNA: 3'- aGUUGUUCC-CGCCCcuUCG---UC-GGCGU- -5' |
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6494 | 5' | -58.2 | NC_001847.1 | + | 76728 | 0.68 | 0.63859 |
Target: 5'- -gGACGGucGGGCGGGGAAGgaCGGUCGg- -3' miRNA: 3'- agUUGUU--CCCGCCCCUUC--GUCGGCgu -5' |
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6494 | 5' | -58.2 | NC_001847.1 | + | 128728 | 0.68 | 0.63859 |
Target: 5'- --uGCGAGGGggaGGGGGuGGUGGCCGUg -3' miRNA: 3'- aguUGUUCCCg--CCCCU-UCGUCGGCGu -5' |
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6494 | 5' | -58.2 | NC_001847.1 | + | 74640 | 0.68 | 0.63859 |
Target: 5'- cUCGcGCGA-GGCGGGGcAGCuGCUGCGc -3' miRNA: 3'- -AGU-UGUUcCCGCCCCuUCGuCGGCGU- -5' |
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6494 | 5' | -58.2 | NC_001847.1 | + | 54448 | 0.68 | 0.63859 |
Target: 5'- aCGAgGGGGGCGGGGAcG-AGCC-CGa -3' miRNA: 3'- aGUUgUUCCCGCCCCUuCgUCGGcGU- -5' |
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6494 | 5' | -58.2 | NC_001847.1 | + | 29291 | 0.68 | 0.63859 |
Target: 5'- gCGGCGcuGGCGGcagaGGccGCGGCCGCGg -3' miRNA: 3'- aGUUGUucCCGCC----CCuuCGUCGGCGU- -5' |
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6494 | 5' | -58.2 | NC_001847.1 | + | 21725 | 0.68 | 0.63859 |
Target: 5'- cCAGCAGGGcGCGGGccGGCgccGGcCCGCGc -3' miRNA: 3'- aGUUGUUCC-CGCCCcuUCG---UC-GGCGU- -5' |
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6494 | 5' | -58.2 | NC_001847.1 | + | 110547 | 0.68 | 0.628318 |
Target: 5'- aUCGGCGAGGGUcgaucgauuaacGGGGcgcauauGCGGCCGg- -3' miRNA: 3'- -AGUUGUUCCCG------------CCCCuu-----CGUCGGCgu -5' |
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6494 | 5' | -58.2 | NC_001847.1 | + | 53932 | 0.68 | 0.628318 |
Target: 5'- aCGGCGAcGGCGGcucugugcGcGAGGCGGCCGCc -3' miRNA: 3'- aGUUGUUcCCGCC--------C-CUUCGUCGGCGu -5' |
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6494 | 5' | -58.2 | NC_001847.1 | + | 20661 | 0.68 | 0.628318 |
Target: 5'- cUCAGC-AGGGCGGaGAcguccgccagcuGGCGGCCGa- -3' miRNA: 3'- -AGUUGuUCCCGCCcCU------------UCGUCGGCgu -5' |
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6494 | 5' | -58.2 | NC_001847.1 | + | 38166 | 0.68 | 0.628318 |
Target: 5'- ---cCGAGGGaccGGAAGCGGCCGUAc -3' miRNA: 3'- aguuGUUCCCgccCCUUCGUCGGCGU- -5' |
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6494 | 5' | -58.2 | NC_001847.1 | + | 115557 | 0.68 | 0.628318 |
Target: 5'- -gGAUcGGGGCGGGGAGGgGGgCGa- -3' miRNA: 3'- agUUGuUCCCGCCCCUUCgUCgGCgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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