miRNA display CGI


Results 61 - 80 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6494 5' -58.2 NC_001847.1 + 21859 0.69 0.56701
Target:  5'- gCAGCAGguGGuGCGGGGGcuGCGGCgCGCu -3'
miRNA:   3'- aGUUGUU--CC-CGCCCCUu-CGUCG-GCGu -5'
6494 5' -58.2 NC_001847.1 + 22119 0.69 0.61497
Target:  5'- aCAGCGGGcgcgcccugggcccGGCGGcGGcGGCGGCgCGCAa -3'
miRNA:   3'- aGUUGUUC--------------CCGCC-CCuUCGUCG-GCGU- -5'
6494 5' -58.2 NC_001847.1 + 22377 0.67 0.689708
Target:  5'- -gGACGAGGcccccGCGGGGccGgGGUCGCGa -3'
miRNA:   3'- agUUGUUCC-----CGCCCCuuCgUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 22420 0.68 0.677508
Target:  5'- gUCcGCGGGGGCGGGGcccgagaccacGCGGUCGg- -3'
miRNA:   3'- -AGuUGUUCCCGCCCCuu---------CGUCGGCgu -5'
6494 5' -58.2 NC_001847.1 + 24765 0.67 0.689708
Target:  5'- gUCAACAGGGGggaGGGGAGGgGGggggGCAc -3'
miRNA:   3'- -AGUUGUUCCCg--CCCCUUCgUCgg--CGU- -5'
6494 5' -58.2 NC_001847.1 + 25064 0.66 0.777895
Target:  5'- aCGAUggGGGgGGGGAGGgGGaaaaaagGCAa -3'
miRNA:   3'- aGUUGuuCCCgCCCCUUCgUCgg-----CGU- -5'
6494 5' -58.2 NC_001847.1 + 25379 0.67 0.689708
Target:  5'- gCGGCGgcAGGGCGGaGGggGa--CCGCGg -3'
miRNA:   3'- aGUUGU--UCCCGCC-CCuuCgucGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 25736 0.69 0.56701
Target:  5'- aCGAgAAGcGGCGGcGGGcGGCGGCgGCAc -3'
miRNA:   3'- aGUUgUUC-CCGCC-CCU-UCGUCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 25915 0.7 0.556913
Target:  5'- --uGCGAGGGgGaGGGggGUgguGGCCGUg -3'
miRNA:   3'- aguUGUUCCCgC-CCCuuCG---UCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 25985 0.72 0.414586
Target:  5'- -aGACcAGGGCGGGcGGGCGGgCGCGc -3'
miRNA:   3'- agUUGuUCCCGCCCcUUCGUCgGCGU- -5'
6494 5' -58.2 NC_001847.1 + 26086 0.77 0.228221
Target:  5'- gCAAUgcuGGGGGCGGaGGGAGCAGUgGCGc -3'
miRNA:   3'- aGUUG---UUCCCGCC-CCUUCGUCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 26323 0.67 0.739614
Target:  5'- -gGAgAAGGGUGaGGG--GCGGCCGUg -3'
miRNA:   3'- agUUgUUCCCGC-CCCuuCGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 26848 0.72 0.441346
Target:  5'- aCAAgaaaGAGGcGCGGGGAAaggagagagacGCGGCCGCc -3'
miRNA:   3'- aGUUg---UUCC-CGCCCCUU-----------CGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 27128 0.66 0.775089
Target:  5'- uUCGACGuc-GCgaaacugccguccgGGGGgcGCAGCCGCGg -3'
miRNA:   3'- -AGUUGUuccCG--------------CCCCuuCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 27391 0.7 0.536883
Target:  5'- aUAGCGAGGuugcuCGGGGggGCGcuguuGCCGCc -3'
miRNA:   3'- aGUUGUUCCc----GCCCCuuCGU-----CGGCGu -5'
6494 5' -58.2 NC_001847.1 + 27522 0.69 0.601643
Target:  5'- gCGGCGGcGGCGGGGAcgcccgagaacGGCggcgcggcggcugggAGCCGCAu -3'
miRNA:   3'- aGUUGUUcCCGCCCCU-----------UCG---------------UCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 27719 0.68 0.648858
Target:  5'- -gGGCAAGGGCgucagcGGcGGAAGCcGCgGCGg -3'
miRNA:   3'- agUUGUUCCCG------CC-CCUUCGuCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 27990 0.75 0.290012
Target:  5'- gCGGCcGGGGC--GGAGGCGGCCGCGg -3'
miRNA:   3'- aGUUGuUCCCGccCCUUCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 28213 0.67 0.699822
Target:  5'- aCGAUggGGGCGaggcccgggaGGGGAGCAccgacGCCGaCGc -3'
miRNA:   3'- aGUUGuuCCCGC----------CCCUUCGU-----CGGC-GU- -5'
6494 5' -58.2 NC_001847.1 + 28626 0.67 0.739614
Target:  5'- gCGGCGGccGCGGGGcccGCGGCCGUg -3'
miRNA:   3'- aGUUGUUccCGCCCCuu-CGUCGGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.