miRNA display CGI


Results 101 - 120 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6494 5' -58.2 NC_001847.1 + 34414 0.71 0.459719
Target:  5'- gCGGCGcugGGGGCGGcGGAAGaaguacuucgGGCCGCGg -3'
miRNA:   3'- aGUUGU---UCCCGCC-CCUUCg---------UCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 34421 0.68 0.63859
Target:  5'- cUCGGCGcagaAGaGGCGGcgcaccgaaauGGAAGUGGCCGCc -3'
miRNA:   3'- -AGUUGU----UC-CCGCC-----------CCUUCGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 34652 0.68 0.669344
Target:  5'- ---cCGAGcGGCGcgccgaGGggGCGGCCGCGc -3'
miRNA:   3'- aguuGUUC-CCGCc-----CCuuCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 35248 0.67 0.739614
Target:  5'- cCGGCGGGcGcGCGGcGGAGauCAGCCGCGc -3'
miRNA:   3'- aGUUGUUC-C-CGCC-CCUUc-GUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 35304 0.67 0.71688
Target:  5'- -gGGCGGGGGCGGGcaacgcaAAGCacuaagcggcccccGGCCGCu -3'
miRNA:   3'- agUUGUUCCCGCCCc------UUCG--------------UCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 35441 0.67 0.739614
Target:  5'- -gAGCAcGGuGCGGcGcGAcGCGGCCGCGg -3'
miRNA:   3'- agUUGUuCC-CGCC-C-CUuCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 35535 0.67 0.729784
Target:  5'- cUCGGCGAGGucGUGGcugccGAGGCGGCgCGCGa -3'
miRNA:   3'- -AGUUGUUCC--CGCCc----CUUCGUCG-GCGU- -5'
6494 5' -58.2 NC_001847.1 + 35913 0.68 0.648858
Target:  5'- aCAACGAGcGGCauGGAccGGCGGUCGCGc -3'
miRNA:   3'- aGUUGUUC-CCGccCCU--UCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 35970 0.67 0.699822
Target:  5'- aCcACGAGGGCGccaaGGcgcgcGCAGCCGCGc -3'
miRNA:   3'- aGuUGUUCCCGCc---CCuu---CGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 37145 0.67 0.718874
Target:  5'- cCAGCGggccuuuGGGGCGgccGGGAAGCGGCaccuCGUg -3'
miRNA:   3'- aGUUGU-------UCCCGC---CCCUUCGUCG----GCGu -5'
6494 5' -58.2 NC_001847.1 + 38166 0.68 0.628318
Target:  5'- ---cCGAGGGaccGGAAGCGGCCGUAc -3'
miRNA:   3'- aguuGUUCCCgccCCUUCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 38279 0.66 0.768499
Target:  5'- --cGCGcGGGCGGcGGcAGGUGGCgGCAg -3'
miRNA:   3'- aguUGUuCCCGCC-CC-UUCGUCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 38420 0.7 0.506357
Target:  5'- uUCGccGCAGGGGCGGGagcccgaGggGCGGgcaUCGCAg -3'
miRNA:   3'- -AGU--UGUUCCCGCCC-------CuuCGUC---GGCGU- -5'
6494 5' -58.2 NC_001847.1 + 39425 0.66 0.777895
Target:  5'- gCAGCGAGGGgGGcgcguGGgcGUAGCC-CAu -3'
miRNA:   3'- aGUUGUUCCCgCC-----CCuuCGUCGGcGU- -5'
6494 5' -58.2 NC_001847.1 + 41084 0.66 0.777895
Target:  5'- --cGCAGGGuGuCGGGGGugauGGUAGCCGg- -3'
miRNA:   3'- aguUGUUCC-C-GCCCCU----UCGUCGGCgu -5'
6494 5' -58.2 NC_001847.1 + 41371 0.7 0.517109
Target:  5'- cCAGcCAAGcGGCGGccGGGccgccgccGGCAGCCGCGc -3'
miRNA:   3'- aGUU-GUUC-CCGCC--CCU--------UCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 42372 0.66 0.777895
Target:  5'- cCAGCGccucGGG-GGGGAugAGCucgcggAGCCGCAu -3'
miRNA:   3'- aGUUGUu---CCCgCCCCU--UCG------UCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 42544 0.78 0.191893
Target:  5'- cUCggUGAGGGCGaGGAcGCGGCCGCGu -3'
miRNA:   3'- -AGuuGUUCCCGCcCCUuCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 42589 0.68 0.658087
Target:  5'- -gGACGAGGaCGGGGGuggugacagggacGGCGccGCCGCGg -3'
miRNA:   3'- agUUGUUCCcGCCCCU-------------UCGU--CGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 42986 0.67 0.739614
Target:  5'- gCAACAAcgccGGGaacgccgcCGGGGggGCgcgccgGGCCGCc -3'
miRNA:   3'- aGUUGUU----CCC--------GCCCCuuCG------UCGGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.