miRNA display CGI


Results 121 - 140 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6494 5' -58.2 NC_001847.1 + 43455 0.67 0.709879
Target:  5'- -gAGCGAa-GCGGGaGccGCAGCCGCAg -3'
miRNA:   3'- agUUGUUccCGCCC-CuuCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 43654 0.68 0.669344
Target:  5'- --cGCGAGGGCucGGGuGGCccGCCGCAg -3'
miRNA:   3'- aguUGUUCCCGc-CCCuUCGu-CGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 43810 0.66 0.777895
Target:  5'- cCGGuCGAGGGCGac--GGCGGCCGCu -3'
miRNA:   3'- aGUU-GUUCCCGCcccuUCGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 46244 0.67 0.699822
Target:  5'- --cGCAAGGGagccgccccCGGcGGGAGCcGCCGCc -3'
miRNA:   3'- aguUGUUCCC---------GCC-CCUUCGuCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 46628 0.68 0.628318
Target:  5'- --uACGAGGGCGaacuuGGcGucGCAGCCGCc -3'
miRNA:   3'- aguUGUUCCCGC-----CC-CuuCGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 46904 0.69 0.574105
Target:  5'- uUCAGCGAGGcuuCGGGGGgcgcgucgggcccgGGCuccgGGCCGCGu -3'
miRNA:   3'- -AGUUGUUCCc--GCCCCU--------------UCG----UCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 47548 0.82 0.106037
Target:  5'- cCAGCAcggcGGGcGCGGGGAgcccGGCGGCCGCGc -3'
miRNA:   3'- aGUUGU----UCC-CGCCCCU----UCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 47632 0.73 0.388847
Target:  5'- uUCGGCGGcGGCGGGcacgugcAAGCAGCCGCc -3'
miRNA:   3'- -AGUUGUUcCCGCCCc------UUCGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 47688 0.66 0.777895
Target:  5'- aCGACGAGGuccuCGGcGuuGGCGGCCGCc -3'
miRNA:   3'- aGUUGUUCCc---GCC-CcuUCGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 48071 0.7 0.517109
Target:  5'- --cGCGAaaGGCGGGGgcGCAcGCCGCGc -3'
miRNA:   3'- aguUGUUc-CCGCCCCuuCGU-CGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 50037 0.74 0.340615
Target:  5'- cCAGCccgcGGGGCGcGGuGGCGGCCGCGg -3'
miRNA:   3'- aGUUGu---UCCCGCcCCuUCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 52800 0.69 0.597549
Target:  5'- gCGACAuGGGCGGGGcuauaGGUCGCu -3'
miRNA:   3'- aGUUGUuCCCGCCCCuucg-UCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 53019 0.66 0.749349
Target:  5'- -uGGCAuccGGGCGucGGGcGGCAGgCGCAa -3'
miRNA:   3'- agUUGUu--CCCGC--CCCuUCGUCgGCGU- -5'
6494 5' -58.2 NC_001847.1 + 53091 0.74 0.32553
Target:  5'- cUCAGCGuucGGCGGGGcGGCGGcCCGCc -3'
miRNA:   3'- -AGUUGUuc-CCGCCCCuUCGUC-GGCGu -5'
6494 5' -58.2 NC_001847.1 + 53615 0.7 0.517109
Target:  5'- -uGGCGGGcGGCGGGGuGGCA-CCGCc -3'
miRNA:   3'- agUUGUUC-CCGCCCCuUCGUcGGCGu -5'
6494 5' -58.2 NC_001847.1 + 53773 0.74 0.310946
Target:  5'- gCGGCGAGGGCGGcagcaccGCAGCCGCc -3'
miRNA:   3'- aGUUGUUCCCGCCccuu---CGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 53855 0.7 0.556913
Target:  5'- --cGCGGGGGUcaGGGGGugcuguggGGCGGCCGUc -3'
miRNA:   3'- aguUGUUCCCG--CCCCU--------UCGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 53932 0.68 0.628318
Target:  5'- aCGGCGAcGGCGGcucugugcGcGAGGCGGCCGCc -3'
miRNA:   3'- aGUUGUUcCCGCC--------C-CUUCGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 54386 0.67 0.729784
Target:  5'- gCGGCGGGcGGCcgcGGGcGAGGCGGgCGCc -3'
miRNA:   3'- aGUUGUUC-CCG---CCC-CUUCGUCgGCGu -5'
6494 5' -58.2 NC_001847.1 + 54448 0.68 0.63859
Target:  5'- aCGAgGGGGGCGGGGAcG-AGCC-CGa -3'
miRNA:   3'- aGUUgUUCCCGCCCCUuCgUCGGcGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.