miRNA display CGI


Results 141 - 160 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6494 5' -58.2 NC_001847.1 + 54515 0.69 0.618049
Target:  5'- -gGugGGGGGCGGuGggGCggGGCCGUc -3'
miRNA:   3'- agUugUUCCCGCCcCuuCG--UCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 54546 0.85 0.063813
Target:  5'- -gGGCGGGGGCGGGGAAgacGCAGUCGCGc -3'
miRNA:   3'- agUUGUUCCCGCCCCUU---CGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 54553 0.69 0.60779
Target:  5'- aCGGCGGGGGCGGcgcGGAGGacgaCGGCCccGCGg -3'
miRNA:   3'- aGUUGUUCCCGCC---CCUUC----GUCGG--CGU- -5'
6494 5' -58.2 NC_001847.1 + 55455 0.67 0.739614
Target:  5'- -uGGCGccGGCGGGGc-GCGcGCCGCGc -3'
miRNA:   3'- agUUGUucCCGCCCCuuCGU-CGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 56143 0.67 0.709879
Target:  5'- gCAGCcuccGGGGUGGcucAGCAGCCGCc -3'
miRNA:   3'- aGUUGu---UCCCGCCccuUCGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 56383 0.73 0.388847
Target:  5'- cUCGGCGcucGGGuCGGGGAGGuCGGCCGg- -3'
miRNA:   3'- -AGUUGUu--CCC-GCCCCUUC-GUCGGCgu -5'
6494 5' -58.2 NC_001847.1 + 56817 0.7 0.525973
Target:  5'- cCGGCGcgccuggGGGcGCGGGGAGGgggcggccCAGCCGCc -3'
miRNA:   3'- aGUUGU-------UCC-CGCCCCUUC--------GUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 56907 0.66 0.756103
Target:  5'- gUCGGCcuccAGGGCGaacccgcccGGGAAcacgacggugcaccGCAGCCGCc -3'
miRNA:   3'- -AGUUGu---UCCCGC---------CCCUU--------------CGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 58025 0.66 0.768499
Target:  5'- gCAACAAGGGCGGcccgcugcuGGcgacccggcuGAcGCAGCuCGCGc -3'
miRNA:   3'- aGUUGUUCCCGCC---------CC----------UU-CGUCG-GCGU- -5'
6494 5' -58.2 NC_001847.1 + 58170 0.66 0.777895
Target:  5'- gCGACcgcGGCGGGGucGUcaaAGCCGCc -3'
miRNA:   3'- aGUUGuucCCGCCCCuuCG---UCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 58516 0.67 0.689708
Target:  5'- -gGGCGAcGGGCaGGGAcacgaagaGGCcGCCGCGg -3'
miRNA:   3'- agUUGUU-CCCGcCCCU--------UCGuCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 58860 0.67 0.708876
Target:  5'- --cGCAccuacccGGGGCGGGGcAGGUAcuGCUGCGg -3'
miRNA:   3'- aguUGU-------UCCCGCCCC-UUCGU--CGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 59026 0.66 0.768499
Target:  5'- gCGACGGuGGCGGGu--GCGGCgGCGg -3'
miRNA:   3'- aGUUGUUcCCGCCCcuuCGUCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 59347 0.71 0.497632
Target:  5'- cCGGCAucgGGGGCGGaGcGGCGGCgGCAg -3'
miRNA:   3'- aGUUGU---UCCCGCCcCuUCGUCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 59551 0.71 0.459719
Target:  5'- gCggUggGGGCGGcGGggGCGguGCCgGCGg -3'
miRNA:   3'- aGuuGuuCCCGCC-CCuuCGU--CGG-CGU- -5'
6494 5' -58.2 NC_001847.1 + 60273 0.68 0.679546
Target:  5'- -gGugAGGGGgGaGGGGAGCcgccaccacAGCCGCc -3'
miRNA:   3'- agUugUUCCCgC-CCCUUCG---------UCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 60293 0.78 0.196754
Target:  5'- aUCGGCAgcGGGGCGGcGGGcGGCAGCgCGCGc -3'
miRNA:   3'- -AGUUGU--UCCCGCC-CCU-UCGUCG-GCGU- -5'
6494 5' -58.2 NC_001847.1 + 60580 0.67 0.739614
Target:  5'- gUCAGC-AGGuuGGGGAucagcgacAGCAGCaGCAa -3'
miRNA:   3'- -AGUUGuUCCcgCCCCU--------UCGUCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 60856 0.69 0.597549
Target:  5'- gCGGCGccAGGGCGuccagcGcGggGCGGCCGCGc -3'
miRNA:   3'- aGUUGU--UCCCGCc-----C-CuuCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 61451 0.68 0.648858
Target:  5'- ------cGGGCGcGGcGAGGCGGUCGCGc -3'
miRNA:   3'- aguuguuCCCGC-CC-CUUCGUCGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.