miRNA display CGI


Results 81 - 100 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6494 5' -58.2 NC_001847.1 + 99795 0.7 0.517109
Target:  5'- gCAGCGccuguGGuGCGGGGucgGAGCGGCCGgGg -3'
miRNA:   3'- aGUUGUu----CC-CGCCCC---UUCGUCGGCgU- -5'
6494 5' -58.2 NC_001847.1 + 98820 0.68 0.679546
Target:  5'- gCGGCAGGacgcacccucgcGGCGGcGGuGGCAGCgGCGc -3'
miRNA:   3'- aGUUGUUC------------CCGCC-CCuUCGUCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 98244 0.66 0.749349
Target:  5'- gCGACGccguGGcGGCGGGGcAGCguAGUCGCc -3'
miRNA:   3'- aGUUGU----UC-CCGCCCCuUCG--UCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 97722 0.75 0.276679
Target:  5'- gUCGGCGGGGGCagaaGcGGAAGCGGCgGCGg -3'
miRNA:   3'- -AGUUGUUCCCGc---C-CCUUCGUCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 96852 0.69 0.587335
Target:  5'- gCGuCGGGGGCGGcGGugggcGGCGGuCCGCGc -3'
miRNA:   3'- aGUuGUUCCCGCC-CCu----UCGUC-GGCGU- -5'
6494 5' -58.2 NC_001847.1 + 96801 0.66 0.787159
Target:  5'- -aAGCu-GGGuCGGGGGGcgcGCAGCgGCGg -3'
miRNA:   3'- agUUGuuCCC-GCCCCUU---CGUCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 96515 0.69 0.622156
Target:  5'- uUCGACGAguGGGCGGcaacGGAccgcgcgcgccggcuGuGCAGCCGCGc -3'
miRNA:   3'- -AGUUGUU--CCCGCC----CCU---------------U-CGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 96393 0.75 0.283283
Target:  5'- gCGGCAAuGGCGGGGccGGCGGCgGCAa -3'
miRNA:   3'- aGUUGUUcCCGCCCCu-UCGUCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 96351 0.72 0.40589
Target:  5'- gCGGCAAuGGCGGGGccGGCGGUgGCAa -3'
miRNA:   3'- aGUUGUUcCCGCCCCu-UCGUCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 96309 0.75 0.283283
Target:  5'- gCGGCAAuGGCGGGGccGGCGGCgGCAa -3'
miRNA:   3'- aGUUGUUcCCGCCCCu-UCGUCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 96264 0.66 0.787159
Target:  5'- gCGGCAAuGGCGGGGccggaaccGgGGCCGUAc -3'
miRNA:   3'- aGUUGUUcCCGCCCCuu------CgUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 96195 0.67 0.729784
Target:  5'- gCGGCAAuGGCGGGGccgGAGUcggGGCCGgAg -3'
miRNA:   3'- aGUUGUUcCCGCCCC---UUCG---UCGGCgU- -5'
6494 5' -58.2 NC_001847.1 + 95949 0.7 0.546869
Target:  5'- -gAACGcuGGCGGGcGAgcgugagcgcAGCAGCCGCu -3'
miRNA:   3'- agUUGUucCCGCCC-CU----------UCGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 95356 0.72 0.441346
Target:  5'- gUCGACu--GGCGGGGGcuggcGGCGGaCCGCGc -3'
miRNA:   3'- -AGUUGuucCCGCCCCU-----UCGUC-GGCGU- -5'
6494 5' -58.2 NC_001847.1 + 95352 0.68 0.648858
Target:  5'- gCAGCcaGGGGaGCGGGGccAGGCGG-CGCAa -3'
miRNA:   3'- aGUUG--UUCC-CGCCCC--UUCGUCgGCGU- -5'
6494 5' -58.2 NC_001847.1 + 95262 0.66 0.758022
Target:  5'- gCGAuCGGGGGCGcgaucGGGGGcgccggcaagcuuGCGGCCGCu -3'
miRNA:   3'- aGUU-GUUCCCGC-----CCCUU-------------CGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 94911 0.69 0.604716
Target:  5'- cCAGCcGGGGCuGGGGGuggaaaaauGGCugcaggccaacucgGGCCGCAu -3'
miRNA:   3'- aGUUGuUCCCG-CCCCU---------UCG--------------UCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 94854 0.66 0.768499
Target:  5'- gCGcCGAGGGggaccuUGGGGGgcgcgGGCAGCuCGCAa -3'
miRNA:   3'- aGUuGUUCCC------GCCCCU-----UCGUCG-GCGU- -5'
6494 5' -58.2 NC_001847.1 + 94155 0.66 0.787159
Target:  5'- gCGACAucucGcGGCGGcugcuGGgcGCGGCCGCc -3'
miRNA:   3'- aGUUGUu---C-CCGCC-----CCuuCGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 93221 0.67 0.703852
Target:  5'- aCGGCGAGGGCGaGGGcgaggguucuucccgGAGUcuuauGGcCCGCAu -3'
miRNA:   3'- aGUUGUUCCCGC-CCC---------------UUCG-----UC-GGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.