miRNA display CGI


Results 101 - 120 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6494 5' -58.2 NC_001847.1 + 92967 0.73 0.380504
Target:  5'- aCGGCucGGGCGGGcGGGCGGCgUGCAg -3'
miRNA:   3'- aGUUGuuCCCGCCCcUUCGUCG-GCGU- -5'
6494 5' -58.2 NC_001847.1 + 91313 0.66 0.758981
Target:  5'- gCAGCGccAGcGCGGcaaaGAAGCGGCCGCc -3'
miRNA:   3'- aGUUGU--UCcCGCCc---CUUCGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 90487 0.66 0.768499
Target:  5'- gUCAcgguGCA--GGCGGGGcAGCAGCCu-- -3'
miRNA:   3'- -AGU----UGUucCCGCCCCuUCGUCGGcgu -5'
6494 5' -58.2 NC_001847.1 + 90329 0.76 0.233862
Target:  5'- --cGCcGGGGcCGGGGgcGCAGCCGCc -3'
miRNA:   3'- aguUGuUCCC-GCCCCuuCGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 89572 0.73 0.380504
Target:  5'- cCGGCGAGGGCGuGGAGcGCGacgccGCCGCGg -3'
miRNA:   3'- aGUUGUUCCCGCcCCUU-CGU-----CGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 87912 0.77 0.219435
Target:  5'- --cACAGGGGCGGGGcguggggcugggcGCGGCCGCGc -3'
miRNA:   3'- aguUGUUCCCGCCCCuu-----------CGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 87408 0.66 0.787159
Target:  5'- --cGCGcGGGCGGGGccccGCccGCCGCGc -3'
miRNA:   3'- aguUGUuCCCGCCCCuu--CGu-CGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 86633 0.69 0.618049
Target:  5'- -aAGCGuguGGGCGGGccgcgccgccccGGAGCGcGCCGCGc -3'
miRNA:   3'- agUUGUu--CCCGCCC------------CUUCGU-CGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 86491 0.72 0.405027
Target:  5'- aCGACGAGGcuGCGGGGGcggcGGCGccccgccGCCGCGg -3'
miRNA:   3'- aGUUGUUCC--CGCCCCU----UCGU-------CGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 86018 0.66 0.777895
Target:  5'- -aGGCGGGGcGCGGcGGGAGCgcgaggaggacaAGCCGg- -3'
miRNA:   3'- agUUGUUCC-CGCC-CCUUCG------------UCGGCgu -5'
6494 5' -58.2 NC_001847.1 + 84230 0.66 0.776961
Target:  5'- aCGGCcGGGGCcgccgcgGGGGAGGagGGCgGCGa -3'
miRNA:   3'- aGUUGuUCCCG-------CCCCUUCg-UCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 83357 0.69 0.60779
Target:  5'- gCGACcGGGacgcGCGGGGcGAGCuggcGCCGCAu -3'
miRNA:   3'- aGUUGuUCC----CGCCCC-UUCGu---CGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 83266 0.7 0.517109
Target:  5'- gCGGCGGGGGCGGGc--GCAGaggCGCAc -3'
miRNA:   3'- aGUUGUUCCCGCCCcuuCGUCg--GCGU- -5'
6494 5' -58.2 NC_001847.1 + 79528 0.69 0.597549
Target:  5'- gCGGCGucgucgccgucGGGGcCGGGGggGCuggGGCuCGCGg -3'
miRNA:   3'- aGUUGU-----------UCCC-GCCCCuuCG---UCG-GCGU- -5'
6494 5' -58.2 NC_001847.1 + 76728 0.68 0.63859
Target:  5'- -gGACGGucGGGCGGGGAAGgaCGGUCGg- -3'
miRNA:   3'- agUUGUU--CCCGCCCCUUC--GUCGGCgu -5'
6494 5' -58.2 NC_001847.1 + 76656 0.67 0.689708
Target:  5'- ---cCGAGGGCGGGGAGgGC-GCCu-- -3'
miRNA:   3'- aguuGUUCCCGCCCCUU-CGuCGGcgu -5'
6494 5' -58.2 NC_001847.1 + 76415 0.68 0.627291
Target:  5'- gCGGCGGGGGCaccccgcGGcGGGAGCGcGCgCGCGg -3'
miRNA:   3'- aGUUGUUCCCG-------CC-CCUUCGU-CG-GCGU- -5'
6494 5' -58.2 NC_001847.1 + 74977 0.7 0.526961
Target:  5'- aCAGCGacGGGGCGGGGcgccAGGCucAGuCCGCc -3'
miRNA:   3'- aGUUGU--UCCCGCCCC----UUCG--UC-GGCGu -5'
6494 5' -58.2 NC_001847.1 + 74640 0.68 0.63859
Target:  5'- cUCGcGCGA-GGCGGGGcAGCuGCUGCGc -3'
miRNA:   3'- -AGU-UGUUcCCGCCCCuUCGuCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 74485 0.78 0.191893
Target:  5'- --cGCGAGGGCGcGGAcGCGGCCGCGc -3'
miRNA:   3'- aguUGUUCCCGCcCCUuCGUCGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.