miRNA display CGI


Results 121 - 140 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6494 5' -58.2 NC_001847.1 + 74474 0.73 0.39731
Target:  5'- -gAGCGGGGGCuGGGcguguugaugcAGCAGCCGCGc -3'
miRNA:   3'- agUUGUUCCCGcCCCu----------UCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 74385 0.66 0.787159
Target:  5'- ----aGAGGcGCuGGGGGAccgcGCGGCCGCc -3'
miRNA:   3'- aguugUUCC-CG-CCCCUU----CGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 73232 0.66 0.787159
Target:  5'- -gGAgGGGGGCGGcGgcGCGGgCGCGc -3'
miRNA:   3'- agUUgUUCCCGCCcCuuCGUCgGCGU- -5'
6494 5' -58.2 NC_001847.1 + 73158 0.72 0.414586
Target:  5'- gCGGCGcgccGGGCGGaGGAGGCGGaCGCGg -3'
miRNA:   3'- aGUUGUu---CCCGCC-CCUUCGUCgGCGU- -5'
6494 5' -58.2 NC_001847.1 + 73111 0.73 0.364179
Target:  5'- -aGGCccGGGUGGcGGAGGUAGCCGCc -3'
miRNA:   3'- agUUGuuCCCGCC-CCUUCGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 73008 0.73 0.35541
Target:  5'- gCAGCGcGGGCGcGGAaccaggccgcggcAGCGGCCGCGg -3'
miRNA:   3'- aGUUGUuCCCGCcCCU-------------UCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 72684 0.71 0.469057
Target:  5'- cCGGCccugcuGAGGcCGGGGAgAGCGGCCGCc -3'
miRNA:   3'- aGUUG------UUCCcGCCCCU-UCGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 72592 0.66 0.768499
Target:  5'- gCGGCcgcGGCGGcagaaGggGCAGCCGCu -3'
miRNA:   3'- aGUUGuucCCGCCc----CuuCGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 72400 0.67 0.729784
Target:  5'- -gGACGcGGGCcccgacgcGGGGAcGGCcacGGCCGCAa -3'
miRNA:   3'- agUUGUuCCCG--------CCCCU-UCG---UCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 72294 0.67 0.739614
Target:  5'- cCAGCAAGauGGaccagcgccuCGGGGGgcugcGGCAGCUGCGc -3'
miRNA:   3'- aGUUGUUC--CC----------GCCCCU-----UCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 71863 0.68 0.648858
Target:  5'- --------aGCGGuGGAAGCGGCCGCGa -3'
miRNA:   3'- aguuguuccCGCC-CCUUCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 71445 0.71 0.459719
Target:  5'- aCGACGAgguuggccccGGGCgcuuccGGGGGcauGGCGGCCGCGa -3'
miRNA:   3'- aGUUGUU----------CCCG------CCCCU---UCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 71068 0.75 0.276679
Target:  5'- aCAccuCGAGGGCGGcGAGGCGGCCGg- -3'
miRNA:   3'- aGUu--GUUCCCGCCcCUUCGUCGGCgu -5'
6494 5' -58.2 NC_001847.1 + 70699 0.7 0.526961
Target:  5'- --cGCGGGcGGCGGcGGggGCGcCCGCGg -3'
miRNA:   3'- aguUGUUC-CCGCC-CCuuCGUcGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 70502 0.66 0.777895
Target:  5'- -uGACGAcGGCGGGcaucAAGCAGCgGCu -3'
miRNA:   3'- agUUGUUcCCGCCCc---UUCGUCGgCGu -5'
6494 5' -58.2 NC_001847.1 + 70274 0.66 0.749349
Target:  5'- aCcGCGAGGacgcgcgccugGCGGGGucGCGGCgCGCc -3'
miRNA:   3'- aGuUGUUCC-----------CGCCCCuuCGUCG-GCGu -5'
6494 5' -58.2 NC_001847.1 + 70240 0.67 0.729784
Target:  5'- -uGACGcgcGGGGCGGGc-GGCGGgCGCGc -3'
miRNA:   3'- agUUGU---UCCCGCCCcuUCGUCgGCGU- -5'
6494 5' -58.2 NC_001847.1 + 69614 0.72 0.423396
Target:  5'- -aAACGAGcGGCGcGGccGGGCGGCCGCAc -3'
miRNA:   3'- agUUGUUC-CCGCcCC--UUCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 69434 0.67 0.689708
Target:  5'- cUCAGCGcGGcGGUGGcGGAcGGCGGCgCGCGc -3'
miRNA:   3'- -AGUUGU-UC-CCGCC-CCU-UCGUCG-GCGU- -5'
6494 5' -58.2 NC_001847.1 + 69206 0.66 0.749349
Target:  5'- cCAGCGccuGGGcguccGCGGGGAAcGCcgacGCCGCGa -3'
miRNA:   3'- aGUUGU---UCC-----CGCCCCUU-CGu---CGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.