miRNA display CGI


Results 41 - 60 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6494 5' -58.2 NC_001847.1 + 60293 0.78 0.196754
Target:  5'- aUCGGCAgcGGGGCGGcGGGcGGCAGCgCGCGc -3'
miRNA:   3'- -AGUUGU--UCCCGCC-CCU-UCGUCG-GCGU- -5'
6494 5' -58.2 NC_001847.1 + 74485 0.78 0.191893
Target:  5'- --cGCGAGGGCGcGGAcGCGGCCGCGc -3'
miRNA:   3'- aguUGUUCCCGCcCCUuCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 124388 0.78 0.182486
Target:  5'- ----aGAGGGCGGGaGAGGgGGCCGCGg -3'
miRNA:   3'- aguugUUCCCGCCC-CUUCgUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 14132 0.78 0.182486
Target:  5'- -gGGCGAuGGGCGGGGcccgcgccuGGGCGGCCGCu -3'
miRNA:   3'- agUUGUU-CCCGCCCC---------UUCGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 62471 0.8 0.130772
Target:  5'- cUCAGCAGGGcCGGGGucgccggcGGGCGGCCGCGg -3'
miRNA:   3'- -AGUUGUUCCcGCCCC--------UUCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 3024 0.76 0.250885
Target:  5'- cCAAUAGGGGCGGucAcgucugcgcgcccAGCAGCCGCAg -3'
miRNA:   3'- aGUUGUUCCCGCCccU-------------UCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 100540 0.76 0.263841
Target:  5'- -aGugGGuGGGCGGGGAGcCGGCCGCGg -3'
miRNA:   3'- agUugUU-CCCGCCCCUUcGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 69614 0.72 0.423396
Target:  5'- -aAACGAGcGGCGcGGccGGGCGGCCGCAc -3'
miRNA:   3'- agUUGUUC-CCGCcCC--UUCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 128798 0.72 0.414586
Target:  5'- -aGACcAGGGCGGGcGGGCGGgCGCGc -3'
miRNA:   3'- agUUGuUCCCGCCCcUUCGUCgGCGU- -5'
6494 5' -58.2 NC_001847.1 + 32073 0.72 0.413711
Target:  5'- aCGGCGGGGGCcggggaagauuggGGGGAGgggggaaacGCGGCUGCGg -3'
miRNA:   3'- aGUUGUUCCCG-------------CCCCUU---------CGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 134959 0.73 0.39731
Target:  5'- -gGGCGGGGGCGGGGGccccGGgGGCCaagacGCAg -3'
miRNA:   3'- agUUGUUCCCGCCCCU----UCgUCGG-----CGU- -5'
6494 5' -58.2 NC_001847.1 + 107665 0.73 0.37228
Target:  5'- gUCAaaacGCAGGGGaGGGGggGgGGCgGCGg -3'
miRNA:   3'- -AGU----UGUUCCCgCCCCuuCgUCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 8615 0.73 0.364179
Target:  5'- gCAgcGCAAGccccGcCGGGGGAGCGGCCGCu -3'
miRNA:   3'- aGU--UGUUCc---C-GCCCCUUCGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 134232 0.73 0.356201
Target:  5'- cCGGCGccGGCGGGcGGcggccGGCGGCCGCGg -3'
miRNA:   3'- aGUUGUucCCGCCC-CU-----UCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 50037 0.74 0.340615
Target:  5'- cCAGCccgcGGGGCGcGGuGGCGGCCGCGg -3'
miRNA:   3'- aGUUGu---UCCCGCcCCuUCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 131476 0.74 0.33301
Target:  5'- -aGAUggGGgacGCGGGGAAGCAGUaCGCGg -3'
miRNA:   3'- agUUGuuCC---CGCCCCUUCGUCG-GCGU- -5'
6494 5' -58.2 NC_001847.1 + 53091 0.74 0.32553
Target:  5'- cUCAGCGuucGGCGGGGcGGCGGcCCGCc -3'
miRNA:   3'- -AGUUGUuc-CCGCCCCuUCGUC-GGCGu -5'
6494 5' -58.2 NC_001847.1 + 130803 0.75 0.290012
Target:  5'- gCGGCcGGGGC--GGAGGCGGCCGCGg -3'
miRNA:   3'- aGUUGuUCCCGccCCUUCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 97722 0.75 0.276679
Target:  5'- gUCGGCGGGGGCagaaGcGGAAGCGGCgGCGg -3'
miRNA:   3'- -AGUUGUUCCCGc---C-CCUUCGUCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 134843 0.76 0.263841
Target:  5'- cCGGCGGGGcGCGGGGAcGGCGcCCGCGc -3'
miRNA:   3'- aGUUGUUCC-CGCCCCU-UCGUcGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.