miRNA display CGI


Results 61 - 80 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6494 5' -58.2 NC_001847.1 + 53091 0.74 0.32553
Target:  5'- cUCAGCGuucGGCGGGGcGGCGGcCCGCc -3'
miRNA:   3'- -AGUUGUuc-CCGCCCCuUCGUC-GGCGu -5'
6494 5' -58.2 NC_001847.1 + 131476 0.74 0.33301
Target:  5'- -aGAUggGGgacGCGGGGAAGCAGUaCGCGg -3'
miRNA:   3'- agUUGuuCC---CGCCCCUUCGUCG-GCGU- -5'
6494 5' -58.2 NC_001847.1 + 129661 0.72 0.441346
Target:  5'- aCAAgaaaGAGGcGCGGGGAAaggagagagacGCGGCCGCc -3'
miRNA:   3'- aGUUg---UUCC-CGCCCCUU-----------CGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 103264 0.71 0.450481
Target:  5'- gCAGCAGcGGCGGcGGcGGCGGCgGCGg -3'
miRNA:   3'- aGUUGUUcCCGCC-CCuUCGUCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 59551 0.71 0.459719
Target:  5'- gCggUggGGGCGGcGGggGCGguGCCgGCGg -3'
miRNA:   3'- aGuuGuuCCCGCC-CCuuCGU--CGG-CGU- -5'
6494 5' -58.2 NC_001847.1 + 34414 0.71 0.459719
Target:  5'- gCGGCGcugGGGGCGGcGGAAGaaguacuucgGGCCGCGg -3'
miRNA:   3'- aGUUGU---UCCCGCC-CCUUCg---------UCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 7725 0.71 0.469057
Target:  5'- uUCAggcGCAGGGcGCGGgcgcGGAGGCGGCgGCc -3'
miRNA:   3'- -AGU---UGUUCC-CGCC----CCUUCGUCGgCGu -5'
6494 5' -58.2 NC_001847.1 + 6952 0.71 0.478491
Target:  5'- -gGGCcAGGcGCGGGGucGCGGCgGCGc -3'
miRNA:   3'- agUUGuUCC-CGCCCCuuCGUCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 11778 0.71 0.478491
Target:  5'- ---cUAAGGGCGGGcGGGCAGUgGCGc -3'
miRNA:   3'- aguuGUUCCCGCCCcUUCGUCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 33503 0.71 0.488017
Target:  5'- gCGGCGcGGGCGGcGGcGGGCGccGCCGCGg -3'
miRNA:   3'- aGUUGUuCCCGCC-CC-UUCGU--CGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 95356 0.72 0.441346
Target:  5'- gUCGACu--GGCGGGGGcuggcGGCGGaCCGCGc -3'
miRNA:   3'- -AGUUGuucCCGCCCCU-----UCGUC-GGCGU- -5'
6494 5' -58.2 NC_001847.1 + 10102 0.72 0.432316
Target:  5'- --cACAAGcGGCGGGGAA--AGCCGCc -3'
miRNA:   3'- aguUGUUC-CCGCCCCUUcgUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 50037 0.74 0.340615
Target:  5'- cCAGCccgcGGGGCGcGGuGGCGGCCGCGg -3'
miRNA:   3'- aGUUGu---UCCCGCcCCuUCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 134232 0.73 0.356201
Target:  5'- cCGGCGccGGCGGGcGGcggccGGCGGCCGCGg -3'
miRNA:   3'- aGUUGUucCCGCCC-CU-----UCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 8615 0.73 0.364179
Target:  5'- gCAgcGCAAGccccGcCGGGGGAGCGGCCGCu -3'
miRNA:   3'- aGU--UGUUCc---C-GCCCCUUCGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 107665 0.73 0.37228
Target:  5'- gUCAaaacGCAGGGGaGGGGggGgGGCgGCGg -3'
miRNA:   3'- -AGU----UGUUCCCgCCCCuuCgUCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 134959 0.73 0.39731
Target:  5'- -gGGCGGGGGCGGGGGccccGGgGGCCaagacGCAg -3'
miRNA:   3'- agUUGUUCCCGCCCCU----UCgUCGG-----CGU- -5'
6494 5' -58.2 NC_001847.1 + 32073 0.72 0.413711
Target:  5'- aCGGCGGGGGCcggggaagauuggGGGGAGgggggaaacGCGGCUGCGg -3'
miRNA:   3'- aGUUGUUCCCG-------------CCCCUU---------CGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 128798 0.72 0.414586
Target:  5'- -aGACcAGGGCGGGcGGGCGGgCGCGc -3'
miRNA:   3'- agUUGuUCCCGCCCcUUCGUCgGCGU- -5'
6494 5' -58.2 NC_001847.1 + 69614 0.72 0.423396
Target:  5'- -aAACGAGcGGCGcGGccGGGCGGCCGCAc -3'
miRNA:   3'- agUUGUUC-CCGCcCC--UUCGUCGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.