miRNA display CGI


Results 101 - 120 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6494 5' -58.2 NC_001847.1 + 25736 0.69 0.56701
Target:  5'- aCGAgAAGcGGCGGcGGGcGGCGGCgGCAc -3'
miRNA:   3'- aGUUgUUC-CCGCC-CCU-UCGUCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 66500 0.69 0.577153
Target:  5'- gUCGGCcagcGGcGCGGuGGAGGCGcGCCGCc -3'
miRNA:   3'- -AGUUGuu--CC-CGCC-CCUUCGU-CGGCGu -5'
6494 5' -58.2 NC_001847.1 + 102070 0.69 0.587335
Target:  5'- gCAGCAAGGGCaGGc--GCGGgCCGCGc -3'
miRNA:   3'- aGUUGUUCCCGcCCcuuCGUC-GGCGU- -5'
6494 5' -58.2 NC_001847.1 + 96852 0.69 0.587335
Target:  5'- gCGuCGGGGGCGGcGGugggcGGCGGuCCGCGc -3'
miRNA:   3'- aGUuGUUCCCGCC-CCu----UCGUC-GGCGU- -5'
6494 5' -58.2 NC_001847.1 + 69 0.69 0.597549
Target:  5'- -gGGCGGGGGCGGGGuGGgGGaugggCGCGg -3'
miRNA:   3'- agUUGUUCCCGCCCCuUCgUCg----GCGU- -5'
6494 5' -58.2 NC_001847.1 + 99795 0.7 0.517109
Target:  5'- gCAGCGccuguGGuGCGGGGucgGAGCGGCCGgGg -3'
miRNA:   3'- aGUUGUu----CC-CGCCCC---UUCGUCGGCgU- -5'
6494 5' -58.2 NC_001847.1 + 83266 0.7 0.517109
Target:  5'- gCGGCGGGGGCGGGc--GCAGaggCGCAc -3'
miRNA:   3'- aGUUGUUCCCGCCCcuuCGUCg--GCGU- -5'
6494 5' -58.2 NC_001847.1 + 129661 0.72 0.441346
Target:  5'- aCAAgaaaGAGGcGCGGGGAAaggagagagacGCGGCCGCc -3'
miRNA:   3'- aGUUg---UUCC-CGCCCCUU-----------CGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 103264 0.71 0.450481
Target:  5'- gCAGCAGcGGCGGcGGcGGCGGCgGCGg -3'
miRNA:   3'- aGUUGUUcCCGCC-CCuUCGUCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 59551 0.71 0.459719
Target:  5'- gCggUggGGGCGGcGGggGCGguGCCgGCGg -3'
miRNA:   3'- aGuuGuuCCCGCC-CCuuCGU--CGG-CGU- -5'
6494 5' -58.2 NC_001847.1 + 34414 0.71 0.459719
Target:  5'- gCGGCGcugGGGGCGGcGGAAGaaguacuucgGGCCGCGg -3'
miRNA:   3'- aGUUGU---UCCCGCC-CCUUCg---------UCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 7725 0.71 0.469057
Target:  5'- uUCAggcGCAGGGcGCGGgcgcGGAGGCGGCgGCc -3'
miRNA:   3'- -AGU---UGUUCC-CGCC----CCUUCGUCGgCGu -5'
6494 5' -58.2 NC_001847.1 + 6952 0.71 0.478491
Target:  5'- -gGGCcAGGcGCGGGGucGCGGCgGCGc -3'
miRNA:   3'- agUUGuUCC-CGCCCCuuCGUCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 11778 0.71 0.478491
Target:  5'- ---cUAAGGGCGGGcGGGCAGUgGCGc -3'
miRNA:   3'- aguuGUUCCCGCCCcUUCGUCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 33503 0.71 0.488017
Target:  5'- gCGGCGcGGGCGGcGGcGGGCGccGCCGCGg -3'
miRNA:   3'- aGUUGUuCCCGCC-CC-UUCGU--CGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 67180 0.71 0.488017
Target:  5'- gUCGACAAGGGCGcgcaGGuAGCAcacGCCGUg -3'
miRNA:   3'- -AGUUGUUCCCGCc---CCuUCGU---CGGCGu -5'
6494 5' -58.2 NC_001847.1 + 17889 0.71 0.488017
Target:  5'- ------cGGGCGGGGcGGGCGGCgGCGu -3'
miRNA:   3'- aguuguuCCCGCCCC-UUCGUCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 59347 0.71 0.497632
Target:  5'- cCGGCAucgGGGGCGGaGcGGCGGCgGCAg -3'
miRNA:   3'- aGUUGU---UCCCGCCcCuUCGUCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 103232 0.7 0.50733
Target:  5'- -gGGCccGGGGCGGGcGGGCGGCgGCGg -3'
miRNA:   3'- agUUGu-UCCCGCCCcUUCGUCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 53615 0.7 0.517109
Target:  5'- -uGGCGGGcGGCGGGGuGGCA-CCGCc -3'
miRNA:   3'- agUUGUUC-CCGCCCCuUCGUcGGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.