miRNA display CGI


Results 121 - 140 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6494 5' -58.2 NC_001847.1 + 124932 0.69 0.61497
Target:  5'- aCAGCGGGcgcgcccugggcccGGCGGcGGcGGCGGCgCGCAa -3'
miRNA:   3'- aGUUGUUC--------------CCGCC-CCuUCGUCG-GCGU- -5'
6494 5' -58.2 NC_001847.1 + 54515 0.69 0.618049
Target:  5'- -gGugGGGGGCGGuGggGCggGGCCGUc -3'
miRNA:   3'- agUugUUCCCGCCcCuuCG--UCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 17789 0.69 0.56701
Target:  5'- uUCGGCGGGGcuuugcucggccGCGGGG-GGCgaGGCCGCc -3'
miRNA:   3'- -AGUUGUUCC------------CGCCCCuUCG--UCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 21859 0.69 0.56701
Target:  5'- gCAGCAGguGGuGCGGGGGcuGCGGCgCGCu -3'
miRNA:   3'- aGUUGUU--CC-CGCCCCUu-CGUCG-GCGu -5'
6494 5' -58.2 NC_001847.1 + 103617 0.7 0.556913
Target:  5'- cCGACGAGG-CGGGGGA-CGacGCCGCGg -3'
miRNA:   3'- aGUUGUUCCcGCCCCUUcGU--CGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 11778 0.71 0.478491
Target:  5'- ---cUAAGGGCGGGcGGGCAGUgGCGc -3'
miRNA:   3'- aguuGUUCCCGCCCcUUCGUCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 33503 0.71 0.488017
Target:  5'- gCGGCGcGGGCGGcGGcGGGCGccGCCGCGg -3'
miRNA:   3'- aGUUGUuCCCGCC-CC-UUCGU--CGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 67180 0.71 0.488017
Target:  5'- gUCGACAAGGGCGcgcaGGuAGCAcacGCCGUg -3'
miRNA:   3'- -AGUUGUUCCCGCc---CCuUCGU---CGGCGu -5'
6494 5' -58.2 NC_001847.1 + 17889 0.71 0.488017
Target:  5'- ------cGGGCGGGGcGGGCGGCgGCGu -3'
miRNA:   3'- aguuguuCCCGCCCC-UUCGUCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 59347 0.71 0.497632
Target:  5'- cCGGCAucgGGGGCGGaGcGGCGGCgGCAg -3'
miRNA:   3'- aGUUGU---UCCCGCCcCuUCGUCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 103232 0.7 0.50733
Target:  5'- -gGGCccGGGGCGGGcGGGCGGCgGCGg -3'
miRNA:   3'- agUUGu-UCCCGCCCcUUCGUCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 53615 0.7 0.517109
Target:  5'- -uGGCGGGcGGCGGGGuGGCA-CCGCc -3'
miRNA:   3'- agUUGUUC-CCGCCCCuUCGUcGGCGu -5'
6494 5' -58.2 NC_001847.1 + 110240 0.69 0.618049
Target:  5'- -gGGgGGGGGgGGGGGcguacuugcAGCGGcCCGCAc -3'
miRNA:   3'- agUUgUUCCCgCCCCU---------UCGUC-GGCGU- -5'
6494 5' -58.2 NC_001847.1 + 83266 0.7 0.517109
Target:  5'- gCGGCGGGGGCGGGc--GCAGaggCGCAc -3'
miRNA:   3'- aGUUGUUCCCGCCCcuuCGUCg--GCGU- -5'
6494 5' -58.2 NC_001847.1 + 99795 0.7 0.517109
Target:  5'- gCAGCGccuguGGuGCGGGGucgGAGCGGCCGgGg -3'
miRNA:   3'- aGUUGUu----CC-CGCCCC---UUCGUCGGCgU- -5'
6494 5' -58.2 NC_001847.1 + 131918 0.7 0.517109
Target:  5'- aCGGCGcGGGCGGcGcGcGAGCGGCUGCGc -3'
miRNA:   3'- aGUUGUuCCCGCC-C-C-UUCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 74977 0.7 0.526961
Target:  5'- aCAGCGacGGGGCGGGGcgccAGGCucAGuCCGCc -3'
miRNA:   3'- aGUUGU--UCCCGCCCC----UUCG--UC-GGCGu -5'
6494 5' -58.2 NC_001847.1 + 17586 0.7 0.536883
Target:  5'- gCAGCAcGGGCGGGGcccgcggaAAGgGGuuGCGc -3'
miRNA:   3'- aGUUGUuCCCGCCCC--------UUCgUCggCGU- -5'
6494 5' -58.2 NC_001847.1 + 130204 0.7 0.536883
Target:  5'- aUAGCGAGGuugcuCGGGGggGCGcuguuGCCGCc -3'
miRNA:   3'- aGUUGUUCCc----GCCCCuuCGU-----CGGCGu -5'
6494 5' -58.2 NC_001847.1 + 66255 0.7 0.546869
Target:  5'- cUCGGCAugcuGGGcCGGGGAGGCcucuucGGCCcgGCGc -3'
miRNA:   3'- -AGUUGUu---CCC-GCCCCUUCG------UCGG--CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.