miRNA display CGI


Results 141 - 160 of 313 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6494 5' -58.2 NC_001847.1 + 74977 0.7 0.526961
Target:  5'- aCAGCGacGGGGCGGGGcgccAGGCucAGuCCGCc -3'
miRNA:   3'- aGUUGU--UCCCGCCCC----UUCG--UC-GGCGu -5'
6494 5' -58.2 NC_001847.1 + 131918 0.7 0.517109
Target:  5'- aCGGCGcGGGCGGcGcGcGAGCGGCUGCGc -3'
miRNA:   3'- aGUUGUuCCCGCC-C-C-UUCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 99795 0.7 0.517109
Target:  5'- gCAGCGccuguGGuGCGGGGucgGAGCGGCCGgGg -3'
miRNA:   3'- aGUUGUu----CC-CGCCCC---UUCGUCGGCgU- -5'
6494 5' -58.2 NC_001847.1 + 83266 0.7 0.517109
Target:  5'- gCGGCGGGGGCGGGc--GCAGaggCGCAc -3'
miRNA:   3'- aGUUGUUCCCGCCCcuuCGUCg--GCGU- -5'
6494 5' -58.2 NC_001847.1 + 53615 0.7 0.517109
Target:  5'- -uGGCGGGcGGCGGGGuGGCA-CCGCc -3'
miRNA:   3'- agUUGUUC-CCGCCCCuUCGUcGGCGu -5'
6494 5' -58.2 NC_001847.1 + 103232 0.7 0.50733
Target:  5'- -gGGCccGGGGCGGGcGGGCGGCgGCGg -3'
miRNA:   3'- agUUGu-UCCCGCCCcUUCGUCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 59347 0.71 0.497632
Target:  5'- cCGGCAucgGGGGCGGaGcGGCGGCgGCAg -3'
miRNA:   3'- aGUUGU---UCCCGCCcCuUCGUCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 17889 0.71 0.488017
Target:  5'- ------cGGGCGGGGcGGGCGGCgGCGu -3'
miRNA:   3'- aguuguuCCCGCCCC-UUCGUCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 17586 0.7 0.536883
Target:  5'- gCAGCAcGGGCGGGGcccgcggaAAGgGGuuGCGc -3'
miRNA:   3'- aGUUGUuCCCGCCCC--------UUCgUCggCGU- -5'
6494 5' -58.2 NC_001847.1 + 130204 0.7 0.536883
Target:  5'- aUAGCGAGGuugcuCGGGGggGCGcuguuGCCGCc -3'
miRNA:   3'- aGUUGUUCCc----GCCCCuuCGU-----CGGCGu -5'
6494 5' -58.2 NC_001847.1 + 96852 0.69 0.587335
Target:  5'- gCGuCGGGGGCGGcGGugggcGGCGGuCCGCGc -3'
miRNA:   3'- aGUuGUUCCCGCC-CCu----UCGUC-GGCGU- -5'
6494 5' -58.2 NC_001847.1 + 102070 0.69 0.587335
Target:  5'- gCAGCAAGGGCaGGc--GCGGgCCGCGc -3'
miRNA:   3'- aGUUGUUCCCGcCCcuuCGUC-GGCGU- -5'
6494 5' -58.2 NC_001847.1 + 66500 0.69 0.577153
Target:  5'- gUCGGCcagcGGcGCGGuGGAGGCGcGCCGCc -3'
miRNA:   3'- -AGUUGuu--CC-CGCC-CCUUCGU-CGGCGu -5'
6494 5' -58.2 NC_001847.1 + 25736 0.69 0.56701
Target:  5'- aCGAgAAGcGGCGGcGGGcGGCGGCgGCAc -3'
miRNA:   3'- aGUUgUUC-CCGCC-CCU-UCGUCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 17789 0.69 0.56701
Target:  5'- uUCGGCGGGGcuuugcucggccGCGGGG-GGCgaGGCCGCc -3'
miRNA:   3'- -AGUUGUUCC------------CGCCCCuUCG--UCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 21859 0.69 0.56701
Target:  5'- gCAGCAGguGGuGCGGGGGcuGCGGCgCGCu -3'
miRNA:   3'- aGUUGUU--CC-CGCCCCUu-CGUCG-GCGu -5'
6494 5' -58.2 NC_001847.1 + 103617 0.7 0.556913
Target:  5'- cCGACGAGG-CGGGGGA-CGacGCCGCGg -3'
miRNA:   3'- aGUUGUUCCcGCCCCUUcGU--CGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 66255 0.7 0.546869
Target:  5'- cUCGGCAugcuGGGcCGGGGAGGCcucuucGGCCcgGCGc -3'
miRNA:   3'- -AGUUGUu---CCC-GCCCCUUCG------UCGG--CGU- -5'
6494 5' -58.2 NC_001847.1 + 17250 1.09 0.001437
Target:  5'- cUCAACAAGGGCGGGGAAGCAGCCGCAg -3'
miRNA:   3'- -AGUUGUUCCCGCCCCUUCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 73232 0.66 0.787159
Target:  5'- -gGAgGGGGGCGGcGgcGCGGgCGCGc -3'
miRNA:   3'- agUUgUUCCCGCCcCuuCGUCgGCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.