miRNA display CGI


Results 81 - 100 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6494 5' -58.2 NC_001847.1 + 56143 0.67 0.709879
Target:  5'- gCAGCcuccGGGGUGGcucAGCAGCCGCc -3'
miRNA:   3'- aGUUGu---UCCCGCCccuUCGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 29983 0.67 0.699822
Target:  5'- gCGGCcGGGccggcGCGGcGGGAGCcGCCGCu -3'
miRNA:   3'- aGUUGuUCC-----CGCC-CCUUCGuCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 8994 0.67 0.689708
Target:  5'- -aGACGGGGGUGGGGGcugGGUGGgCGgAg -3'
miRNA:   3'- agUUGUUCCCGCCCCU---UCGUCgGCgU- -5'
6494 5' -58.2 NC_001847.1 + 43654 0.68 0.669344
Target:  5'- --cGCGAGGGCucGGGuGGCccGCCGCAg -3'
miRNA:   3'- aguUGUUCCCGc-CCCuUCGu-CGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 14020 0.68 0.669344
Target:  5'- gCAGCAGGcGGCGGc---GCAGCgCGCAg -3'
miRNA:   3'- aGUUGUUC-CCGCCccuuCGUCG-GCGU- -5'
6494 5' -58.2 NC_001847.1 + 61451 0.68 0.648858
Target:  5'- ------cGGGCGcGGcGAGGCGGUCGCGc -3'
miRNA:   3'- aguuguuCCCGC-CC-CUUCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 34421 0.68 0.63859
Target:  5'- cUCGGCGcagaAGaGGCGGcgcaccgaaauGGAAGUGGCCGCc -3'
miRNA:   3'- -AGUUGU----UC-CCGCC-----------CCUUCGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 29790 0.67 0.729784
Target:  5'- cCGGCcc-GGCGGcGGGAGC-GCCGCc -3'
miRNA:   3'- aGUUGuucCCGCC-CCUUCGuCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 28626 0.67 0.739614
Target:  5'- gCGGCGGccGCGGGGcccGCGGCCGUg -3'
miRNA:   3'- aGUUGUUccCGCCCCuu-CGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 69206 0.66 0.749349
Target:  5'- cCAGCGccuGGGcguccGCGGGGAAcGCcgacGCCGCGa -3'
miRNA:   3'- aGUUGU---UCC-----CGCCCCUU-CGu---CGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 7427 0.69 0.618049
Target:  5'- -gGGgGGGGGgGGGGGcguacuugcAGCGGcCCGCAc -3'
miRNA:   3'- agUUgUUCCCgCCCCU---------UCGUC-GGCGU- -5'
6494 5' -58.2 NC_001847.1 + 109265 0.69 0.597549
Target:  5'- gUCGGCAGGGGCGggcugcaagcgaGGGggGCgAGCaagaugGCGa -3'
miRNA:   3'- -AGUUGUUCCCGC------------CCCuuCG-UCGg-----CGU- -5'
6494 5' -58.2 NC_001847.1 + 46904 0.69 0.574105
Target:  5'- uUCAGCGAGGcuuCGGGGGgcgcgucgggcccgGGCuccgGGCCGCGu -3'
miRNA:   3'- -AGUUGUUCCc--GCCCCU--------------UCG----UCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 25915 0.7 0.556913
Target:  5'- --uGCGAGGGgGaGGGggGUgguGGCCGUg -3'
miRNA:   3'- aguUGUUCCCgC-CCCuuCG---UCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 123504 0.7 0.536883
Target:  5'- -aAGCGGGGcCGGGGccaGGGCuGCCGCGg -3'
miRNA:   3'- agUUGUUCCcGCCCC---UUCGuCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 58170 0.66 0.777895
Target:  5'- gCGACcgcGGCGGGGucGUcaaAGCCGCc -3'
miRNA:   3'- aGUUGuucCCGCCCCuuCG---UCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 19811 0.66 0.768499
Target:  5'- gUCAACGccAGcGGCGGGGuGGCuuuuGUCGaCAc -3'
miRNA:   3'- -AGUUGU--UC-CCGCCCCuUCGu---CGGC-GU- -5'
6494 5' -58.2 NC_001847.1 + 72592 0.66 0.768499
Target:  5'- gCGGCcgcGGCGGcagaaGggGCAGCCGCu -3'
miRNA:   3'- aGUUGuucCCGCCc----CuuCGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 66694 0.66 0.758981
Target:  5'- cCGGCcgcGGGCGcGGAccucuGCGGCCGCu -3'
miRNA:   3'- aGUUGuu-CCCGCcCCUu----CGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 95262 0.66 0.758022
Target:  5'- gCGAuCGGGGGCGcgaucGGGGGcgccggcaagcuuGCGGCCGCu -3'
miRNA:   3'- aGUU-GUUCCCGC-----CCCUU-------------CGUCGGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.