miRNA display CGI


Results 101 - 120 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6494 5' -58.2 NC_001847.1 + 804 0.7 0.556913
Target:  5'- cCGACGAGG-CGGGGGA-CGacGCCGCGg -3'
miRNA:   3'- aGUUGUUCCcGCCCCUUcGU--CGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 70699 0.7 0.526961
Target:  5'- --cGCGGGcGGCGGcGGggGCGcCCGCGg -3'
miRNA:   3'- aguUGUUC-CCGCC-CCuuCGUcGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 48071 0.7 0.517109
Target:  5'- --cGCGAaaGGCGGGGgcGCAcGCCGCGc -3'
miRNA:   3'- aguUGUUc-CCGCCCCuuCGU-CGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 38420 0.7 0.506357
Target:  5'- uUCGccGCAGGGGCGGGagcccgaGggGCGGgcaUCGCAg -3'
miRNA:   3'- -AGU--UGUUCCCGCCC-------CuuCGUC---GGCGU- -5'
6494 5' -58.2 NC_001847.1 + 132666 0.71 0.488017
Target:  5'- uUCAcACGGcGGCGGGGgcGCcGCCGCc -3'
miRNA:   3'- -AGU-UGUUcCCGCCCCuuCGuCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 43654 0.68 0.669344
Target:  5'- --cGCGAGGGCucGGGuGGCccGCCGCAg -3'
miRNA:   3'- aguUGUUCCCGc-CCCuUCGu-CGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 8994 0.67 0.689708
Target:  5'- -aGACGGGGGUGGGGGcugGGUGGgCGgAg -3'
miRNA:   3'- agUUGUUCCCGCCCCU---UCGUCgGCgU- -5'
6494 5' -58.2 NC_001847.1 + 58170 0.66 0.777895
Target:  5'- gCGACcgcGGCGGGGucGUcaaAGCCGCc -3'
miRNA:   3'- aGUUGuucCCGCCCCuuCG---UCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 19811 0.66 0.768499
Target:  5'- gUCAACGccAGcGGCGGGGuGGCuuuuGUCGaCAc -3'
miRNA:   3'- -AGUUGU--UC-CCGCCCCuUCGu---CGGC-GU- -5'
6494 5' -58.2 NC_001847.1 + 72592 0.66 0.768499
Target:  5'- gCGGCcgcGGCGGcagaaGggGCAGCCGCu -3'
miRNA:   3'- aGUUGuucCCGCCc----CuuCGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 66694 0.66 0.758981
Target:  5'- cCGGCcgcGGGCGcGGAccucuGCGGCCGCu -3'
miRNA:   3'- aGUUGuu-CCCGCcCCUu----CGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 95262 0.66 0.758022
Target:  5'- gCGAuCGGGGGCGcgaucGGGGGcgccggcaagcuuGCGGCCGCu -3'
miRNA:   3'- aGUU-GUUCCCGC-----CCCUU-------------CGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 69206 0.66 0.749349
Target:  5'- cCAGCGccuGGGcguccGCGGGGAAcGCcgacGCCGCGa -3'
miRNA:   3'- aGUUGU---UCC-----CGCCCCUU-CGu---CGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 28626 0.67 0.739614
Target:  5'- gCGGCGGccGCGGGGcccGCGGCCGUg -3'
miRNA:   3'- aGUUGUUccCGCCCCuu-CGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 29790 0.67 0.729784
Target:  5'- cCGGCcc-GGCGGcGGGAGC-GCCGCc -3'
miRNA:   3'- aGUUGuucCCGCC-CCUUCGuCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 124711 0.67 0.71987
Target:  5'- -gAGCcGGGcGCGGGGGcGGCAG-CGCGa -3'
miRNA:   3'- agUUGuUCC-CGCCCCU-UCGUCgGCGU- -5'
6494 5' -58.2 NC_001847.1 + 37145 0.67 0.718874
Target:  5'- cCAGCGggccuuuGGGGCGgccGGGAAGCGGCaccuCGUg -3'
miRNA:   3'- aGUUGU-------UCCCGC---CCCUUCGUCG----GCGu -5'
6494 5' -58.2 NC_001847.1 + 15331 0.67 0.709879
Target:  5'- gUAGCGGGGGCGGgcGGggGguGC-GUg -3'
miRNA:   3'- aGUUGUUCCCGCC--CCuuCguCGgCGu -5'
6494 5' -58.2 NC_001847.1 + 56143 0.67 0.709879
Target:  5'- gCAGCcuccGGGGUGGcucAGCAGCCGCc -3'
miRNA:   3'- aGUUGu---UCCCGCCccuUCGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 29983 0.67 0.699822
Target:  5'- gCGGCcGGGccggcGCGGcGGGAGCcGCCGCu -3'
miRNA:   3'- aGUUGuUCC-----CGCC-CCUUCGuCGGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.