miRNA display CGI


Results 121 - 140 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6494 5' -58.2 NC_001847.1 + 56907 0.66 0.756103
Target:  5'- gUCGGCcuccAGGGCGaacccgcccGGGAAcacgacggugcaccGCAGCCGCc -3'
miRNA:   3'- -AGUUGu---UCCCGC---------CCCUU--------------CGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 53019 0.66 0.749349
Target:  5'- -uGGCAuccGGGCGucGGGcGGCAGgCGCAa -3'
miRNA:   3'- agUUGUu--CCCGC--CCCuUCGUCgGCGU- -5'
6494 5' -58.2 NC_001847.1 + 41371 0.7 0.517109
Target:  5'- cCAGcCAAGcGGCGGccGGGccgccgccGGCAGCCGCGc -3'
miRNA:   3'- aGUU-GUUC-CCGCC--CCU--------UCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 56817 0.7 0.525973
Target:  5'- cCGGCGcgccuggGGGcGCGGGGAGGgggcggccCAGCCGCc -3'
miRNA:   3'- aGUUGU-------UCC-CGCCCCUUC--------GUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 27391 0.7 0.536883
Target:  5'- aUAGCGAGGuugcuCGGGGggGCGcuguuGCCGCc -3'
miRNA:   3'- aGUUGUUCCc----GCCCCuuCGU-----CGGCGu -5'
6494 5' -58.2 NC_001847.1 + 117323 0.67 0.71987
Target:  5'- gCGACcuAGcGGCGGGG-GGCGGCCu-- -3'
miRNA:   3'- aGUUGu-UC-CCGCCCCuUCGUCGGcgu -5'
6494 5' -58.2 NC_001847.1 + 116440 0.67 0.709879
Target:  5'- ---uCGAGGGCGGuGGgcGCuGgCGCAc -3'
miRNA:   3'- aguuGUUCCCGCC-CCuuCGuCgGCGU- -5'
6494 5' -58.2 NC_001847.1 + 5542 0.67 0.709879
Target:  5'- cUCGcACcGGcGGCGGcGGcAGCAGCgGCAg -3'
miRNA:   3'- -AGU-UGuUC-CCGCC-CCuUCGUCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 28213 0.67 0.699822
Target:  5'- aCGAUggGGGCGaggcccgggaGGGGAGCAccgacGCCGaCGc -3'
miRNA:   3'- aGUUGuuCCCGC----------CCCUUCGU-----CGGC-GU- -5'
6494 5' -58.2 NC_001847.1 + 25379 0.67 0.689708
Target:  5'- gCGGCGgcAGGGCGGaGGggGa--CCGCGg -3'
miRNA:   3'- aGUUGU--UCCCGCC-CCuuCgucGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 22420 0.68 0.677508
Target:  5'- gUCcGCGGGGGCGGGGcccgagaccacGCGGUCGg- -3'
miRNA:   3'- -AGuUGUUCCCGCCCCuu---------CGUCGGCgu -5'
6494 5' -58.2 NC_001847.1 + 67506 0.68 0.669344
Target:  5'- cUCGACGAGGGCacGGucGCGGaCGCGg -3'
miRNA:   3'- -AGUUGUUCCCGccCCuuCGUCgGCGU- -5'
6494 5' -58.2 NC_001847.1 + 10732 0.68 0.659112
Target:  5'- cCAGCGaguuuaggGGGGCGGGGccccGCGGCCc-- -3'
miRNA:   3'- aGUUGU--------UCCCGCCCCuu--CGUCGGcgu -5'
6494 5' -58.2 NC_001847.1 + 61451 0.68 0.648858
Target:  5'- ------cGGGCGcGGcGAGGCGGUCGCGc -3'
miRNA:   3'- aguuguuCCCGC-CC-CUUCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 76728 0.68 0.63859
Target:  5'- -gGACGGucGGGCGGGGAAGgaCGGUCGg- -3'
miRNA:   3'- agUUGUU--CCCGCCCCUUC--GUCGGCgu -5'
6494 5' -58.2 NC_001847.1 + 38166 0.68 0.628318
Target:  5'- ---cCGAGGGaccGGAAGCGGCCGUAc -3'
miRNA:   3'- aguuGUUCCCgccCCUUCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 29875 0.69 0.618049
Target:  5'- -gGACGGGGaCGGGGAcggcgaGGCGGCgGCc -3'
miRNA:   3'- agUUGUUCCcGCCCCU------UCGUCGgCGu -5'
6494 5' -58.2 NC_001847.1 + 120920 0.69 0.60779
Target:  5'- gCAuACGAGGGCGGGGcgggcgcGCGGgCGUg -3'
miRNA:   3'- aGU-UGUUCCCGCCCCuu-----CGUCgGCGu -5'
6494 5' -58.2 NC_001847.1 + 79528 0.69 0.597549
Target:  5'- gCGGCGucgucgccgucGGGGcCGGGGggGCuggGGCuCGCGg -3'
miRNA:   3'- aGUUGU-----------UCCC-GCCCCuuCG---UCG-GCGU- -5'
6494 5' -58.2 NC_001847.1 + 119522 0.7 0.556913
Target:  5'- ----gAGGGGCGGcGGccGCGGCCgGCAg -3'
miRNA:   3'- aguugUUCCCGCC-CCuuCGUCGG-CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.