Results 41 - 60 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6496 | 3' | -51.7 | NC_001847.1 | + | 121762 | 0.67 | 0.954784 |
Target: 5'- --cGCGGCGc-GCCCGGAcGUGCgcgCCg -3' miRNA: 3'- cauCGCCGUcaUGGGUUU-CACGaa-GG- -5' |
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6496 | 3' | -51.7 | NC_001847.1 | + | 61979 | 0.68 | 0.952293 |
Target: 5'- cGgcGCGGCGGgcauaauggGCCCGAAGagcggcgcggggcccUGCggCCg -3' miRNA: 3'- -CauCGCCGUCa--------UGGGUUUC---------------ACGaaGG- -5' |
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6496 | 3' | -51.7 | NC_001847.1 | + | 127073 | 0.68 | 0.950583 |
Target: 5'- --cGCGGCGGUGCCCcccucUGCgcgcgggCCg -3' miRNA: 3'- cauCGCCGUCAUGGGuuuc-ACGaa-----GG- -5' |
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6496 | 3' | -51.7 | NC_001847.1 | + | 27303 | 0.68 | 0.950583 |
Target: 5'- -aGGaCGGCGGUGCCgGcGG-GCgugUCCa -3' miRNA: 3'- caUC-GCCGUCAUGGgUuUCaCGa--AGG- -5' |
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6496 | 3' | -51.7 | NC_001847.1 | + | 18738 | 0.68 | 0.950583 |
Target: 5'- --cGCGGCccGGgGCCCAGAGcGCcgCCg -3' miRNA: 3'- cauCGCCG--UCaUGGGUUUCaCGaaGG- -5' |
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6496 | 3' | -51.7 | NC_001847.1 | + | 44702 | 0.68 | 0.946128 |
Target: 5'- -gAGCGGUAGagaGCCCAGGGUaGCgggaagggcgCCg -3' miRNA: 3'- caUCGCCGUCa--UGGGUUUCA-CGaa--------GG- -5' |
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6496 | 3' | -51.7 | NC_001847.1 | + | 64227 | 0.68 | 0.945207 |
Target: 5'- -gGGCGGCGGcgcgaagcUGCCCG-AGUGCcgcgaguagcggUCCg -3' miRNA: 3'- caUCGCCGUC--------AUGGGUuUCACGa-----------AGG- -5' |
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6496 | 3' | -51.7 | NC_001847.1 | + | 108747 | 0.68 | 0.941418 |
Target: 5'- -gGGCGGCGGacgacggGCCCGcccgcUGCUUCUa -3' miRNA: 3'- caUCGCCGUCa------UGGGUuuc--ACGAAGG- -5' |
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6496 | 3' | -51.7 | NC_001847.1 | + | 5934 | 0.68 | 0.941418 |
Target: 5'- -gGGCGGCGGacgacggGCCCGcccgcUGCUUCUa -3' miRNA: 3'- caUCGCCGUCa------UGGGUuuc--ACGAAGG- -5' |
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6496 | 3' | -51.7 | NC_001847.1 | + | 121272 | 0.68 | 0.936448 |
Target: 5'- -cAGCGGCAGUGCCgCGuccgcuAGcagGCUguaCCg -3' miRNA: 3'- caUCGCCGUCAUGG-GUu-----UCa--CGAa--GG- -5' |
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6496 | 3' | -51.7 | NC_001847.1 | + | 82907 | 0.68 | 0.931218 |
Target: 5'- -cGGCGcGCGGcGCCCGGGG-GCUUUUu -3' miRNA: 3'- caUCGC-CGUCaUGGGUUUCaCGAAGG- -5' |
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6496 | 3' | -51.7 | NC_001847.1 | + | 47490 | 0.68 | 0.93068 |
Target: 5'- --uGCGGCGcaGCCCAAacagcgcAGUugGCUUCCa -3' miRNA: 3'- cauCGCCGUcaUGGGUU-------UCA--CGAAGG- -5' |
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6496 | 3' | -51.7 | NC_001847.1 | + | 121614 | 0.69 | 0.919972 |
Target: 5'- -cGGCGGCGGUugCUGccGcUGCUgcugCCg -3' miRNA: 3'- caUCGCCGUCAugGGUuuC-ACGAa---GG- -5' |
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6496 | 3' | -51.7 | NC_001847.1 | + | 106262 | 0.69 | 0.919972 |
Target: 5'- --uGCGGCAGcGCCCAcAGcGCgUUCUg -3' miRNA: 3'- cauCGCCGUCaUGGGUuUCaCG-AAGG- -5' |
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6496 | 3' | -51.7 | NC_001847.1 | + | 18556 | 0.69 | 0.919972 |
Target: 5'- -gAGCGGCAGcgcugcGCCCAGAGcGCagaugCCc -3' miRNA: 3'- caUCGCCGUCa-----UGGGUUUCaCGaa---GG- -5' |
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6496 | 3' | -51.7 | NC_001847.1 | + | 3449 | 0.69 | 0.919972 |
Target: 5'- --uGCGGCAGcGCCCAcAGcGCgUUCUg -3' miRNA: 3'- cauCGCCGUCaUGGGUuUCaCG-AAGG- -5' |
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6496 | 3' | -51.7 | NC_001847.1 | + | 78207 | 0.69 | 0.913957 |
Target: 5'- -cGGCGGCugcGGUGCaCCGucGUGUUcCCg -3' miRNA: 3'- caUCGCCG---UCAUG-GGUuuCACGAaGG- -5' |
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6496 | 3' | -51.7 | NC_001847.1 | + | 3874 | 0.69 | 0.907682 |
Target: 5'- -cAGCGGCGGcgGCCCGucGcGCggcgCCg -3' miRNA: 3'- caUCGCCGUCa-UGGGUuuCaCGaa--GG- -5' |
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6496 | 3' | -51.7 | NC_001847.1 | + | 106718 | 0.69 | 0.907682 |
Target: 5'- uUGGCGGC-GUGCgCCAGGGcGCUaagCCc -3' miRNA: 3'- cAUCGCCGuCAUG-GGUUUCaCGAa--GG- -5' |
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6496 | 3' | -51.7 | NC_001847.1 | + | 106687 | 0.69 | 0.907682 |
Target: 5'- -cAGCGGCGGcgGCCCGucGcGCggcgCCg -3' miRNA: 3'- caUCGCCGUCa-UGGGUuuCaCGaa--GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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