miRNA display CGI


Results 61 - 80 of 361 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6497 3' -54.3 NC_001847.1 + 102232 0.66 0.944023
Target:  5'- gGGCGgGACGGcguccaGGCGcUCGCgCGCGGc -3'
miRNA:   3'- gUCGUaUUGCU------UCGUcAGCGgGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 101234 0.66 0.92924
Target:  5'- gAGCugccAC-AGGCGGUccugcaCGCCCGCGGc -3'
miRNA:   3'- gUCGuau-UGcUUCGUCA------GCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 86482 0.66 0.945381
Target:  5'- gCGGCAcgGACGAcgaggcugcgggggcGGCGG-CGCCCcgccgccGCGGc -3'
miRNA:   3'- -GUCGUa-UUGCU---------------UCGUCaGCGGG-------CGCC- -5'
6497 3' -54.3 NC_001847.1 + 49349 0.66 0.948463
Target:  5'- aCGGCAUucgcgccaAACGucgcGGUGGUCGCCgGCa- -3'
miRNA:   3'- -GUCGUA--------UUGCu---UCGUCAGCGGgCGcc -5'
6497 3' -54.3 NC_001847.1 + 122080 0.66 0.944023
Target:  5'- gCAGCAgcGCGucacgccaaaaaGAGCAG-CGCCUcaGUGGg -3'
miRNA:   3'- -GUCGUauUGC------------UUCGUCaGCGGG--CGCC- -5'
6497 3' -54.3 NC_001847.1 + 42711 0.66 0.939341
Target:  5'- cCAGCccggauuUGGCGcGGCGGgcgGCCgCGCGGg -3'
miRNA:   3'- -GUCGu------AUUGCuUCGUCag-CGG-GCGCC- -5'
6497 3' -54.3 NC_001847.1 + 102746 0.66 0.939341
Target:  5'- aCGGCc-GACGggGC-GUCGUgCCGCGu -3'
miRNA:   3'- -GUCGuaUUGCuuCGuCAGCG-GGCGCc -5'
6497 3' -54.3 NC_001847.1 + 58803 0.66 0.944023
Target:  5'- cCGGCGgccCGuAGGCAGUCGCUCGa-- -3'
miRNA:   3'- -GUCGUauuGC-UUCGUCAGCGGGCgcc -5'
6497 3' -54.3 NC_001847.1 + 66680 0.66 0.944023
Target:  5'- -cGCGcGGCGggGCcc-CGgCCGCGGg -3'
miRNA:   3'- guCGUaUUGCuuCGucaGCgGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 132564 0.66 0.92924
Target:  5'- gCGGCcgcGGCGGccgcGCAGgCGCCCGCGc -3'
miRNA:   3'- -GUCGua-UUGCUu---CGUCaGCGGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 31419 0.66 0.934413
Target:  5'- cCGGCGccGGCGGgcGGCGGccggCGgCCGCGGc -3'
miRNA:   3'- -GUCGUa-UUGCU--UCGUCa---GCgGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 28510 0.66 0.92924
Target:  5'- aGGCGUGGCccGGCAG-CGCgCCGCc- -3'
miRNA:   3'- gUCGUAUUGcuUCGUCaGCG-GGCGcc -5'
6497 3' -54.3 NC_001847.1 + 3187 0.66 0.92924
Target:  5'- gCGGCAggcGACGGcgcAGCGGUCcgccaGCUCGCGc -3'
miRNA:   3'- -GUCGUa--UUGCU---UCGUCAG-----CGGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 27698 0.66 0.934413
Target:  5'- aGGCGc-GCGAgcgccGGCGGgcCGCCCGCGc -3'
miRNA:   3'- gUCGUauUGCU-----UCGUCa-GCGGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 22400 0.66 0.92924
Target:  5'- gGGCcgcGGCG-AGCGuGcUCGUCCGCGGg -3'
miRNA:   3'- gUCGua-UUGCuUCGU-C-AGCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 78776 0.67 0.923819
Target:  5'- gAGCGc--CGAGGUcGUgccgcccgCGCCCGCGGa -3'
miRNA:   3'- gUCGUauuGCUUCGuCA--------GCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 78706 0.67 0.923819
Target:  5'- gCAGCAc-GCGAgugcgGGCGGUCuUCCGCGa -3'
miRNA:   3'- -GUCGUauUGCU-----UCGUCAGcGGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 132338 0.67 0.893045
Target:  5'- cCGGCGcGGCu-GGCGGccgCGCUCGCGGc -3'
miRNA:   3'- -GUCGUaUUGcuUCGUCa--GCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 83915 0.67 0.923819
Target:  5'- gCAGCGgcGCGcccgcGAGCAGg-GCCCGCu- -3'
miRNA:   3'- -GUCGUauUGC-----UUCGUCagCGGGCGcc -5'
6497 3' -54.3 NC_001847.1 + 35993 0.67 0.899683
Target:  5'- gCAGCc--GCGcuGCAGgCGgCCGCGGg -3'
miRNA:   3'- -GUCGuauUGCuuCGUCaGCgGGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.