miRNA display CGI


Results 81 - 100 of 361 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6497 3' -54.3 NC_001847.1 + 57391 0.67 0.893045
Target:  5'- -cGCGUA-CGugcGGCGGguccCGCUCGCGGa -3'
miRNA:   3'- guCGUAUuGCu--UCGUCa---GCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 5660 0.67 0.893045
Target:  5'- cCAGCGgauGCGc-GCcGUCGCgCGCGGc -3'
miRNA:   3'- -GUCGUau-UGCuuCGuCAGCGgGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 76894 0.67 0.899683
Target:  5'- -uGCcUGACGGagGGCGGUCGCgCGCc- -3'
miRNA:   3'- guCGuAUUGCU--UCGUCAGCGgGCGcc -5'
6497 3' -54.3 NC_001847.1 + 104884 0.67 0.923819
Target:  5'- gCAGCgGUGGCGgcG-AG-CGcCCCGCGGg -3'
miRNA:   3'- -GUCG-UAUUGCuuCgUCaGC-GGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 84355 0.67 0.906083
Target:  5'- gCAGCGccGCGAGGUguauugAG-CGgCCGCGGa -3'
miRNA:   3'- -GUCGUauUGCUUCG------UCaGCgGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 10903 0.67 0.923819
Target:  5'- gCAGCugGUGGCGgcGCGGUaCuaCCGCGa -3'
miRNA:   3'- -GUCG--UAUUGCuuCGUCA-GcgGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 53001 0.67 0.91224
Target:  5'- aGGCAUGGCGGagccgacagcGGCGGcCGCUgCGCGc -3'
miRNA:   3'- gUCGUAUUGCU----------UCGUCaGCGG-GCGCc -5'
6497 3' -54.3 NC_001847.1 + 78776 0.67 0.923819
Target:  5'- gAGCGc--CGAGGUcGUgccgcccgCGCCCGCGGa -3'
miRNA:   3'- gUCGUauuGCUUCGuCA--------GCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 130802 0.67 0.918153
Target:  5'- -cGCGgc-CGggGCGGaggCGgCCGCGGc -3'
miRNA:   3'- guCGUauuGCuuCGUCa--GCgGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 119245 0.67 0.918153
Target:  5'- gAGCuggGACuGAuuauGGCGG-CGCCCGCGcGg -3'
miRNA:   3'- gUCGua-UUG-CU----UCGUCaGCGGGCGC-C- -5'
6497 3' -54.3 NC_001847.1 + 84604 0.67 0.918153
Target:  5'- cCAGCA--GCGccGCugcGUCGCCUucgaGCGGg -3'
miRNA:   3'- -GUCGUauUGCuuCGu--CAGCGGG----CGCC- -5'
6497 3' -54.3 NC_001847.1 + 17735 0.67 0.918153
Target:  5'- uCGGCGU-ACGAGGCGGccacggccucgCGCUCGCa- -3'
miRNA:   3'- -GUCGUAuUGCUUCGUCa----------GCGGGCGcc -5'
6497 3' -54.3 NC_001847.1 + 15071 0.67 0.918153
Target:  5'- cCGGCGgccCGggGa--UCGCCUGCGGc -3'
miRNA:   3'- -GUCGUauuGCuuCgucAGCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 67944 0.67 0.914635
Target:  5'- gCAGCAcGACGGcacacagccgcggcaGGgGGUCGCCgccgagaGCGGg -3'
miRNA:   3'- -GUCGUaUUGCU---------------UCgUCAGCGGg------CGCC- -5'
6497 3' -54.3 NC_001847.1 + 36118 0.67 0.91224
Target:  5'- gGGCGccuuccACGAAGCcGcgCGCgCCGCGGa -3'
miRNA:   3'- gUCGUau----UGCUUCGuCa-GCG-GGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 36369 0.67 0.923819
Target:  5'- gCGGCGccgccGCGGcccgGGCAGcgCGCgCCGCGGc -3'
miRNA:   3'- -GUCGUau---UGCU----UCGUCa-GCG-GGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 53842 0.67 0.91224
Target:  5'- gCGGCAgcgGCGGcgcuGGCGG-CGCUgGCGGc -3'
miRNA:   3'- -GUCGUau-UGCU----UCGUCaGCGGgCGCC- -5'
6497 3' -54.3 NC_001847.1 + 85366 0.67 0.906083
Target:  5'- gGGCGUGGC-AAGC-GUCGCCagCGCGu -3'
miRNA:   3'- gUCGUAUUGcUUCGuCAGCGG--GCGCc -5'
6497 3' -54.3 NC_001847.1 + 4164 0.67 0.918153
Target:  5'- cCAGCG-AGCGGgccuuguuuugGGCcGcgCGCCCGUGGg -3'
miRNA:   3'- -GUCGUaUUGCU-----------UCGuCa-GCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 23519 0.67 0.91224
Target:  5'- gAGCAc-ACGAGGUcGcCGCCCGUGa -3'
miRNA:   3'- gUCGUauUGCUUCGuCaGCGGGCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.