miRNA display CGI


Results 41 - 60 of 361 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6497 3' -54.3 NC_001847.1 + 29010 0.73 0.636906
Target:  5'- cCGGCGccGGCGGcAGCGG-CGCCCGCGc -3'
miRNA:   3'- -GUCGUa-UUGCU-UCGUCaGCGGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 46667 0.73 0.636906
Target:  5'- uCGGCAgaguagGGCGAGcagcacgcgcgcGCGGUCgggGCCCGCGGc -3'
miRNA:   3'- -GUCGUa-----UUGCUU------------CGUCAG---CGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 131823 0.73 0.636906
Target:  5'- cCGGCGccGGCGGcAGCGG-CGCCCGCGc -3'
miRNA:   3'- -GUCGUa-UUGCU-UCGUCaGCGGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 95963 0.73 0.636906
Target:  5'- gAGCGUGAgCGcAGCAGcCGCugCCGCGGc -3'
miRNA:   3'- gUCGUAUU-GCuUCGUCaGCG--GGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 80628 0.73 0.636906
Target:  5'- gCGGUugccgAUGGCGAcGGCGG-CGCUCGCGGg -3'
miRNA:   3'- -GUCG-----UAUUGCU-UCGUCaGCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 52589 0.72 0.698904
Target:  5'- gCGGCGgc-CGAGGCcga-GCCCGCGGg -3'
miRNA:   3'- -GUCGUauuGCUUCGucagCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 35920 0.72 0.688661
Target:  5'- gCGGCAUGGaccGGCGGUCGCgCGCGc -3'
miRNA:   3'- -GUCGUAUUgcuUCGUCAGCGgGCGCc -5'
6497 3' -54.3 NC_001847.1 + 32030 0.72 0.688661
Target:  5'- cCGGCGgggcGCGggGaCGG-CGCCCGCGcGg -3'
miRNA:   3'- -GUCGUau--UGCuuC-GUCaGCGGGCGC-C- -5'
6497 3' -54.3 NC_001847.1 + 102382 0.72 0.688661
Target:  5'- cCGGcCGUcGCGAAGC-GcCGCCCGCGa -3'
miRNA:   3'- -GUC-GUAuUGCUUCGuCaGCGGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 65740 0.72 0.698904
Target:  5'- gCGGCGcu-CGAgAGCguGGUgGCCCGCGGg -3'
miRNA:   3'- -GUCGUauuGCU-UCG--UCAgCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 134843 0.72 0.688661
Target:  5'- cCGGCGgggcGCGggGaCGG-CGCCCGCGcGg -3'
miRNA:   3'- -GUCGUau--UGCuuC-GUCaGCGGGCGC-C- -5'
6497 3' -54.3 NC_001847.1 + 18974 0.72 0.698904
Target:  5'- cCAGCGcGGCc--GCGG-CGCCCGCGGc -3'
miRNA:   3'- -GUCGUaUUGcuuCGUCaGCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 9733 0.72 0.688661
Target:  5'- cCGGCGgcgcCGggGCAGUCG-CCGuCGGu -3'
miRNA:   3'- -GUCGUauu-GCuuCGUCAGCgGGC-GCC- -5'
6497 3' -54.3 NC_001847.1 + 114412 0.72 0.668041
Target:  5'- uCGGCGUugagguaGAAGCGGUcCGCCaGCGGg -3'
miRNA:   3'- -GUCGUAuug----CUUCGUCA-GCGGgCGCC- -5'
6497 3' -54.3 NC_001847.1 + 99778 0.72 0.668041
Target:  5'- gCGGCuuugGGCGGggGGCAG-CGCCUGUGGu -3'
miRNA:   3'- -GUCGua--UUGCU--UCGUCaGCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 89969 0.72 0.657681
Target:  5'- cCAGCGcgcGGCgGAAGCGGUgcugCGCgCCGCGGg -3'
miRNA:   3'- -GUCGUa--UUG-CUUCGUCA----GCG-GGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 134191 0.72 0.657681
Target:  5'- cCGGCGcAGCGugGAGCGG-CGCgCGCGGg -3'
miRNA:   3'- -GUCGUaUUGC--UUCGUCaGCGgGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 73867 0.72 0.678371
Target:  5'- aGGCG--GCGgcGCGG-CGCCCGCGc -3'
miRNA:   3'- gUCGUauUGCuuCGUCaGCGGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 1043 0.72 0.6473
Target:  5'- gCAGCAgcACG-AGC-GUCuCCCGCGGg -3'
miRNA:   3'- -GUCGUauUGCuUCGuCAGcGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 61855 0.72 0.698904
Target:  5'- cCGGCGUAggccGCGccuGcCGG-CGCCCGCGGg -3'
miRNA:   3'- -GUCGUAU----UGCuu-C-GUCaGCGGGCGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.