miRNA display CGI


Results 81 - 100 of 361 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6497 3' -54.3 NC_001847.1 + 120084 0.71 0.729245
Target:  5'- gAGCcgcGCGggGCGGgagauaaagCGCCCGCGc -3'
miRNA:   3'- gUCGuauUGCuuCGUCa--------GCGGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 31258 0.71 0.709088
Target:  5'- cCGGCGUGgacugggacGCGGAcCAGg-GCCCGCGGg -3'
miRNA:   3'- -GUCGUAU---------UGCUUcGUCagCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 109200 0.71 0.739199
Target:  5'- gGGCGgguGCGAucgGGCAGaccaagCGCCgGCGGg -3'
miRNA:   3'- gUCGUau-UGCU---UCGUCa-----GCGGgCGCC- -5'
6497 3' -54.3 NC_001847.1 + 53453 0.71 0.709088
Target:  5'- gCAGCGcgcgcAGCG-AGCAcUCGCCCGCGa -3'
miRNA:   3'- -GUCGUa----UUGCuUCGUcAGCGGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 82825 0.71 0.749056
Target:  5'- cCAGCGUGuuucccgguugGCGccGCccgCGCCCGCGGu -3'
miRNA:   3'- -GUCGUAU-----------UGCuuCGucaGCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 113919 0.71 0.749056
Target:  5'- gCAGCGaGAgGAAGCAGcgCGCggUCGCGGc -3'
miRNA:   3'- -GUCGUaUUgCUUCGUCa-GCG--GGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 17810 0.71 0.733237
Target:  5'- -cGCGgggGGCGAGGCcgccccccgccgcuaGGUCGCCCaucGCGGc -3'
miRNA:   3'- guCGUa--UUGCUUCG---------------UCAGCGGG---CGCC- -5'
6497 3' -54.3 NC_001847.1 + 106659 0.71 0.739199
Target:  5'- gCGGCG--GCGccGCGG-CGUCCGCGGc -3'
miRNA:   3'- -GUCGUauUGCuuCGUCaGCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 17085 0.71 0.739199
Target:  5'- cCGGCAaucuGCGAGGUcggggucggGGUCGuCCUGCGGc -3'
miRNA:   3'- -GUCGUau--UGCUUCG---------UCAGC-GGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 73054 0.71 0.739199
Target:  5'- -uGC-UGGCGAAGCAa-CGCgCCGCGGg -3'
miRNA:   3'- guCGuAUUGCUUCGUcaGCG-GGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 105641 0.71 0.729245
Target:  5'- -uGCGgc-CGAAGC-GcCGCCCGCGGc -3'
miRNA:   3'- guCGUauuGCUUCGuCaGCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 77628 0.7 0.768442
Target:  5'- gGGCGagGACGgcGC-GcCGCCCGUGGa -3'
miRNA:   3'- gUCGUa-UUGCuuCGuCaGCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 106583 0.7 0.796559
Target:  5'- aGGCccu-CGcGGguGUCGCCCGCGc -3'
miRNA:   3'- gUCGuauuGCuUCguCAGCGGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 43128 0.7 0.796559
Target:  5'- -cGCA-GACGgcGCGG--GCCCGCGGg -3'
miRNA:   3'- guCGUaUUGCuuCGUCagCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 126203 0.7 0.796559
Target:  5'- gGGCugggugGGCGGAGCucacuuggcggGGUCGUCgGCGGg -3'
miRNA:   3'- gUCGua----UUGCUUCG-----------UCAGCGGgCGCC- -5'
6497 3' -54.3 NC_001847.1 + 89537 0.7 0.796559
Target:  5'- gCGGCAgcGACGGGuCAGauUgGCCCGCGGg -3'
miRNA:   3'- -GUCGUa-UUGCUUcGUC--AgCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 43442 0.7 0.757837
Target:  5'- cCGGCGUcgcgacccggggcGACGgcGCGGUCGCCgaGCGc -3'
miRNA:   3'- -GUCGUA-------------UUGCuuCGUCAGCGGg-CGCc -5'
6497 3' -54.3 NC_001847.1 + 78640 0.7 0.796559
Target:  5'- -uGCuuuuUGGCGgcGCGGUCGCgCGCGc -3'
miRNA:   3'- guCGu---AUUGCuuCGUCAGCGgGCGCc -5'
6497 3' -54.3 NC_001847.1 + 32649 0.7 0.796559
Target:  5'- gAGCuggagGGCGAGGUGGacggCGCCgGCGGc -3'
miRNA:   3'- gUCGua---UUGCUUCGUCa---GCGGgCGCC- -5'
6497 3' -54.3 NC_001847.1 + 31045 0.7 0.787328
Target:  5'- cCGGCc-GACGucGCGGUCGCCgcUGUGGg -3'
miRNA:   3'- -GUCGuaUUGCuuCGUCAGCGG--GCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.