miRNA display CGI


Results 81 - 100 of 361 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6497 3' -54.3 NC_001847.1 + 17810 0.71 0.733237
Target:  5'- -cGCGgggGGCGAGGCcgccccccgccgcuaGGUCGCCCaucGCGGc -3'
miRNA:   3'- guCGUa--UUGCUUCG---------------UCAGCGGG---CGCC- -5'
6497 3' -54.3 NC_001847.1 + 106659 0.71 0.739199
Target:  5'- gCGGCG--GCGccGCGG-CGUCCGCGGc -3'
miRNA:   3'- -GUCGUauUGCuuCGUCaGCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 73054 0.71 0.739199
Target:  5'- -uGC-UGGCGAAGCAa-CGCgCCGCGGg -3'
miRNA:   3'- guCGuAUUGCUUCGUcaGCG-GGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 69440 0.71 0.739199
Target:  5'- gCGGCgGUGGCGGacGGCGGcgCGCgCGCGGc -3'
miRNA:   3'- -GUCG-UAUUGCU--UCGUCa-GCGgGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 109200 0.71 0.739199
Target:  5'- gGGCGgguGCGAucgGGCAGaccaagCGCCgGCGGg -3'
miRNA:   3'- gUCGUau-UGCU---UCGUCa-----GCGGgCGCC- -5'
6497 3' -54.3 NC_001847.1 + 17085 0.71 0.739199
Target:  5'- cCGGCAaucuGCGAGGUcggggucggGGUCGuCCUGCGGc -3'
miRNA:   3'- -GUCGUau--UGCUUCG---------UCAGC-GGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 60865 0.71 0.749056
Target:  5'- gGGCGUccagcGCGggGCGGccgCGCCCG-GGa -3'
miRNA:   3'- gUCGUAu----UGCuuCGUCa--GCGGGCgCC- -5'
6497 3' -54.3 NC_001847.1 + 32169 0.71 0.749056
Target:  5'- aCGGCGUGcgcgGCGGAGCuuGgcgCGCgCGCGGc -3'
miRNA:   3'- -GUCGUAU----UGCUUCGu-Ca--GCGgGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 3882 0.71 0.749056
Target:  5'- gCAGCucccAGCGGAGCGagccGUUGCgCGCGGu -3'
miRNA:   3'- -GUCGua--UUGCUUCGU----CAGCGgGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 113919 0.71 0.749056
Target:  5'- gCAGCGaGAgGAAGCAGcgCGCggUCGCGGc -3'
miRNA:   3'- -GUCGUaUUgCUUCGUCa-GCG--GGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 82825 0.71 0.749056
Target:  5'- cCAGCGUGuuucccgguugGCGccGCccgCGCCCGCGGu -3'
miRNA:   3'- -GUCGUAU-----------UGCuuCGucaGCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 43442 0.7 0.757837
Target:  5'- cCGGCGUcgcgacccggggcGACGgcGCGGUCGCCgaGCGc -3'
miRNA:   3'- -GUCGUA-------------UUGCuuCGUCAGCGGg-CGCc -5'
6497 3' -54.3 NC_001847.1 + 58606 0.7 0.758807
Target:  5'- gCAGUAacACGcuGGcCAGcgCGCCCGCGGg -3'
miRNA:   3'- -GUCGUauUGCu-UC-GUCa-GCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 81818 0.7 0.758807
Target:  5'- aGGCG--GCGggGCGcgccgucuGUCGCCCGCc- -3'
miRNA:   3'- gUCGUauUGCuuCGU--------CAGCGGGCGcc -5'
6497 3' -54.3 NC_001847.1 + 51152 0.7 0.768442
Target:  5'- uCAGCAgAACGggGaCGG-CGCCuucgCGCGGu -3'
miRNA:   3'- -GUCGUaUUGCuuC-GUCaGCGG----GCGCC- -5'
6497 3' -54.3 NC_001847.1 + 125528 0.7 0.768442
Target:  5'- gCGGCGgcgGGCGcAGCuacGGUCGucCCCGCGGc -3'
miRNA:   3'- -GUCGUa--UUGCuUCG---UCAGC--GGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 10873 0.7 0.768442
Target:  5'- gGGCGcgGGCGcccAGGCAGacCGCCUGCGGc -3'
miRNA:   3'- gUCGUa-UUGC---UUCGUCa-GCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 77628 0.7 0.768442
Target:  5'- gGGCGagGACGgcGC-GcCGCCCGUGGa -3'
miRNA:   3'- gUCGUa-UUGCuuCGuCaGCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 99018 0.7 0.768442
Target:  5'- aCAGCGcugccucgGGCGGcgAGCAc-CGCCCGCGGa -3'
miRNA:   3'- -GUCGUa-------UUGCU--UCGUcaGCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 119068 0.7 0.768442
Target:  5'- uCAGCGUAcuggagGCGcccAGCAGagGCgCCGCGGc -3'
miRNA:   3'- -GUCGUAU------UGCu--UCGUCagCG-GGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.