miRNA display CGI


Results 101 - 120 of 361 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6497 3' -54.3 NC_001847.1 + 62901 0.7 0.777952
Target:  5'- gCAGCggGUGGCGcGGguGcUCgggGCCCGCGGg -3'
miRNA:   3'- -GUCG--UAUUGCuUCguC-AG---CGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 120978 0.7 0.777952
Target:  5'- -cGCGUAaGCGcGGCcGUCGCCCuaGCGGc -3'
miRNA:   3'- guCGUAU-UGCuUCGuCAGCGGG--CGCC- -5'
6497 3' -54.3 NC_001847.1 + 72220 0.7 0.777952
Target:  5'- -----cGACGAGG-AGcCGCCCGCGGg -3'
miRNA:   3'- gucguaUUGCUUCgUCaGCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 16782 0.7 0.777952
Target:  5'- aGGCcgGGCGAGGC-GUCGUacguggcggUCGCGGa -3'
miRNA:   3'- gUCGuaUUGCUUCGuCAGCG---------GGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 53717 0.7 0.777952
Target:  5'- cCGGCGgcucGCGggGCGGaUCGgCgCGCGGc -3'
miRNA:   3'- -GUCGUau--UGCuuCGUC-AGCgG-GCGCC- -5'
6497 3' -54.3 NC_001847.1 + 31045 0.7 0.787328
Target:  5'- cCGGCc-GACGucGCGGUCGCCgcUGUGGg -3'
miRNA:   3'- -GUCGuaUUGCuuCGUCAGCGG--GCGCC- -5'
6497 3' -54.3 NC_001847.1 + 108068 0.7 0.787328
Target:  5'- cCAGCGUG--GgcGCGGUgcCGCCCGgGGg -3'
miRNA:   3'- -GUCGUAUugCuuCGUCA--GCGGGCgCC- -5'
6497 3' -54.3 NC_001847.1 + 52038 0.7 0.787328
Target:  5'- -uGCuacGCGAGGCGGagGCCCGCccGGa -3'
miRNA:   3'- guCGuauUGCUUCGUCagCGGGCG--CC- -5'
6497 3' -54.3 NC_001847.1 + 3770 0.7 0.796559
Target:  5'- aGGCccu-CGcGGguGUCGCCCGCGc -3'
miRNA:   3'- gUCGuauuGCuUCguCAGCGGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 30257 0.7 0.796559
Target:  5'- uGGCG--GCGuuGCAG-CGCgCCGCGGc -3'
miRNA:   3'- gUCGUauUGCuuCGUCaGCG-GGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 32649 0.7 0.796559
Target:  5'- gAGCuggagGGCGAGGUGGacggCGCCgGCGGc -3'
miRNA:   3'- gUCGua---UUGCUUCGUCa---GCGGgCGCC- -5'
6497 3' -54.3 NC_001847.1 + 78640 0.7 0.796559
Target:  5'- -uGCuuuuUGGCGgcGCGGUCGCgCGCGc -3'
miRNA:   3'- guCGu---AUUGCuuCGUCAGCGgGCGCc -5'
6497 3' -54.3 NC_001847.1 + 89537 0.7 0.796559
Target:  5'- gCGGCAgcGACGGGuCAGauUgGCCCGCGGg -3'
miRNA:   3'- -GUCGUa-UUGCUUcGUC--AgCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 126203 0.7 0.796559
Target:  5'- gGGCugggugGGCGGAGCucacuuggcggGGUCGUCgGCGGg -3'
miRNA:   3'- gUCGua----UUGCUUCG-----------UCAGCGGgCGCC- -5'
6497 3' -54.3 NC_001847.1 + 43128 0.7 0.796559
Target:  5'- -cGCA-GACGgcGCGG--GCCCGCGGg -3'
miRNA:   3'- guCGUaUUGCuuCGUCagCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 106583 0.7 0.796559
Target:  5'- aGGCccu-CGcGGguGUCGCCCGCGc -3'
miRNA:   3'- gUCGuauuGCuUCguCAGCGGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 23390 0.7 0.796559
Target:  5'- gGGCugggugGGCGGAGCucacuuggcggGGUCGUCgGCGGg -3'
miRNA:   3'- gUCGua----UUGCUUCG-----------UCAGCGGgCGCC- -5'
6497 3' -54.3 NC_001847.1 + 58002 0.7 0.796559
Target:  5'- gCGGCGcaGGCGGcGGCGGUCGCgCGCGc -3'
miRNA:   3'- -GUCGUa-UUGCU-UCGUCAGCGgGCGCc -5'
6497 3' -54.3 NC_001847.1 + 120918 0.7 0.796559
Target:  5'- aGGCAUAcgaggGCGggGCGG--GCgCGCGGg -3'
miRNA:   3'- gUCGUAU-----UGCuuCGUCagCGgGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 124336 0.69 0.802025
Target:  5'- gCAGCAgcGCGcGGCAGUagcccaaaaacagGCCCGCGu -3'
miRNA:   3'- -GUCGUauUGCuUCGUCAg------------CGGGCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.