miRNA display CGI


Results 61 - 80 of 361 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6497 3' -54.3 NC_001847.1 + 101234 0.66 0.92924
Target:  5'- gAGCugccAC-AGGCGGUccugcaCGCCCGCGGc -3'
miRNA:   3'- gUCGuau-UGcUUCGUCA------GCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 132726 0.66 0.92924
Target:  5'- aAGCuUGGCGAAGCGG-CGCa-GCGa -3'
miRNA:   3'- gUCGuAUUGCUUCGUCaGCGggCGCc -5'
6497 3' -54.3 NC_001847.1 + 28510 0.66 0.92924
Target:  5'- aGGCGUGGCccGGCAG-CGCgCCGCc- -3'
miRNA:   3'- gUCGUAUUGcuUCGUCaGCG-GGCGcc -5'
6497 3' -54.3 NC_001847.1 + 125213 0.66 0.92924
Target:  5'- gGGCcgcGGCG-AGCGuGcUCGUCCGCGGg -3'
miRNA:   3'- gUCGua-UUGCuUCGU-C-AGCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 84980 0.66 0.92924
Target:  5'- aCGGCG--GCGAGGCAGaagaccgucaCGCCgGCGa -3'
miRNA:   3'- -GUCGUauUGCUUCGUCa---------GCGGgCGCc -5'
6497 3' -54.3 NC_001847.1 + 106000 0.66 0.92924
Target:  5'- gCGGCAggcGACGGcgcAGCGGUCcgccaGCUCGCGc -3'
miRNA:   3'- -GUCGUa--UUGCU---UCGUCAG-----CGGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 17266 0.66 0.92924
Target:  5'- aAGCAgc-CGcAGGCccAGUCGCCgGUGGc -3'
miRNA:   3'- gUCGUauuGC-UUCG--UCAGCGGgCGCC- -5'
6497 3' -54.3 NC_001847.1 + 22400 0.66 0.92924
Target:  5'- gGGCcgcGGCG-AGCGuGcUCGUCCGCGGg -3'
miRNA:   3'- gUCGua-UUGCuUCGU-C-AGCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 132564 0.66 0.92924
Target:  5'- gCGGCcgcGGCGGccgcGCAGgCGCCCGCGc -3'
miRNA:   3'- -GUCGua-UUGCUu---CGUCaGCGGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 12673 0.66 0.92924
Target:  5'- aCGGCGacGCGAAGCuGcacugcgCGUCgGCGGg -3'
miRNA:   3'- -GUCGUauUGCUUCGuCa------GCGGgCGCC- -5'
6497 3' -54.3 NC_001847.1 + 3187 0.66 0.92924
Target:  5'- gCGGCAggcGACGGcgcAGCGGUCcgccaGCUCGCGc -3'
miRNA:   3'- -GUCGUa--UUGCU---UCGUCAG-----CGGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 130616 0.66 0.92924
Target:  5'- gGGCGgccgccGCGAGGCAcGUCGUgCGCa- -3'
miRNA:   3'- gUCGUau----UGCUUCGU-CAGCGgGCGcc -5'
6497 3' -54.3 NC_001847.1 + 92070 0.66 0.92924
Target:  5'- -cGCcgAGCc-AGCAG-CGCCCGCGu -3'
miRNA:   3'- guCGuaUUGcuUCGUCaGCGGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 48748 0.66 0.92924
Target:  5'- gCAGUAUGACucAGCcGcgCGCCCGCc- -3'
miRNA:   3'- -GUCGUAUUGcuUCGuCa-GCGGGCGcc -5'
6497 3' -54.3 NC_001847.1 + 46869 0.66 0.92764
Target:  5'- cCAGCA-GGCGAAGCGcuccccccguccccGcccggCGCCCGCGc -3'
miRNA:   3'- -GUCGUaUUGCUUCGU--------------Ca----GCGGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 78706 0.67 0.923819
Target:  5'- gCAGCAc-GCGAgugcgGGCGGUCuUCCGCGa -3'
miRNA:   3'- -GUCGUauUGCU-----UCGUCAGcGGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 78776 0.67 0.923819
Target:  5'- gAGCGc--CGAGGUcGUgccgcccgCGCCCGCGGa -3'
miRNA:   3'- gUCGUauuGCUUCGuCA--------GCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 10903 0.67 0.923819
Target:  5'- gCAGCugGUGGCGgcGCGGUaCuaCCGCGa -3'
miRNA:   3'- -GUCG--UAUUGCuuCGUCA-GcgGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 83915 0.67 0.923819
Target:  5'- gCAGCGgcGCGcccgcGAGCAGg-GCCCGCu- -3'
miRNA:   3'- -GUCGUauUGC-----UUCGUCagCGGGCGcc -5'
6497 3' -54.3 NC_001847.1 + 36369 0.67 0.923819
Target:  5'- gCGGCGccgccGCGGcccgGGCAGcgCGCgCCGCGGc -3'
miRNA:   3'- -GUCGUau---UGCU----UCGUCa-GCG-GGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.