Results 81 - 100 of 361 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6497 | 3' | -54.3 | NC_001847.1 | + | 10903 | 0.67 | 0.923819 |
Target: 5'- gCAGCugGUGGCGgcGCGGUaCuaCCGCGa -3' miRNA: 3'- -GUCG--UAUUGCuuCGUCA-GcgGGCGCc -5' |
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6497 | 3' | -54.3 | NC_001847.1 | + | 36369 | 0.67 | 0.923819 |
Target: 5'- gCGGCGccgccGCGGcccgGGCAGcgCGCgCCGCGGc -3' miRNA: 3'- -GUCGUau---UGCU----UCGUCa-GCG-GGCGCC- -5' |
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6497 | 3' | -54.3 | NC_001847.1 | + | 104884 | 0.67 | 0.923819 |
Target: 5'- gCAGCgGUGGCGgcG-AG-CGcCCCGCGGg -3' miRNA: 3'- -GUCG-UAUUGCuuCgUCaGC-GGGCGCC- -5' |
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6497 | 3' | -54.3 | NC_001847.1 | + | 128195 | 0.67 | 0.923819 |
Target: 5'- gCGGCAgGGCGGAGgGGga--CCGCGGa -3' miRNA: 3'- -GUCGUaUUGCUUCgUCagcgGGCGCC- -5' |
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6497 | 3' | -54.3 | NC_001847.1 | + | 81192 | 0.67 | 0.923819 |
Target: 5'- gAGCAca--GAGGCGGcCGCCuCGCGc -3' miRNA: 3'- gUCGUauugCUUCGUCaGCGG-GCGCc -5' |
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6497 | 3' | -54.3 | NC_001847.1 | + | 25382 | 0.67 | 0.923819 |
Target: 5'- gCGGCAgGGCGGAGgGGga--CCGCGGa -3' miRNA: 3'- -GUCGUaUUGCUUCgUCagcgGGCGCC- -5' |
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6497 | 3' | -54.3 | NC_001847.1 | + | 91376 | 0.67 | 0.923819 |
Target: 5'- cCAGCAccGGCaGGAuGCAGUCgaagagGCCCGCGu -3' miRNA: 3'- -GUCGUa-UUG-CUU-CGUCAG------CGGGCGCc -5' |
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6497 | 3' | -54.3 | NC_001847.1 | + | 119796 | 0.67 | 0.923819 |
Target: 5'- aAGUG-AGCGAAGCGGcacUGCgCGCGGa -3' miRNA: 3'- gUCGUaUUGCUUCGUCa--GCGgGCGCC- -5' |
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6497 | 3' | -54.3 | NC_001847.1 | + | 83915 | 0.67 | 0.923819 |
Target: 5'- gCAGCGgcGCGcccgcGAGCAGg-GCCCGCu- -3' miRNA: 3'- -GUCGUauUGC-----UUCGUCagCGGGCGcc -5' |
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6497 | 3' | -54.3 | NC_001847.1 | + | 127197 | 0.67 | 0.923264 |
Target: 5'- -cGCAUGgcGCGAAcuccggcGCGG-CGCgCGCGGg -3' miRNA: 3'- guCGUAU--UGCUU-------CGUCaGCGgGCGCC- -5' |
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6497 | 3' | -54.3 | NC_001847.1 | + | 24384 | 0.67 | 0.923264 |
Target: 5'- -cGCAUGgcGCGAAcuccggcGCGG-CGCgCGCGGg -3' miRNA: 3'- guCGUAU--UGCUU-------CGUCaGCGgGCGCC- -5' |
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6497 | 3' | -54.3 | NC_001847.1 | + | 42005 | 0.67 | 0.923264 |
Target: 5'- uCGGCGcggAACGAAGCuG-CGCCgugccggCGCGGc -3' miRNA: 3'- -GUCGUa--UUGCUUCGuCaGCGG-------GCGCC- -5' |
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6497 | 3' | -54.3 | NC_001847.1 | + | 58204 | 0.67 | 0.918153 |
Target: 5'- cCAGCA-GGCGcuccGGGCGGaUCuGCCCGcCGGg -3' miRNA: 3'- -GUCGUaUUGC----UUCGUC-AG-CGGGC-GCC- -5' |
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6497 | 3' | -54.3 | NC_001847.1 | + | 15071 | 0.67 | 0.918153 |
Target: 5'- cCGGCGgccCGggGa--UCGCCUGCGGc -3' miRNA: 3'- -GUCGUauuGCuuCgucAGCGGGCGCC- -5' |
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6497 | 3' | -54.3 | NC_001847.1 | + | 27989 | 0.67 | 0.918153 |
Target: 5'- -cGCGgc-CGggGCGGaggCGgCCGCGGc -3' miRNA: 3'- guCGUauuGCuuCGUCa--GCgGGCGCC- -5' |
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6497 | 3' | -54.3 | NC_001847.1 | + | 84604 | 0.67 | 0.918153 |
Target: 5'- cCAGCA--GCGccGCugcGUCGCCUucgaGCGGg -3' miRNA: 3'- -GUCGUauUGCuuCGu--CAGCGGG----CGCC- -5' |
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6497 | 3' | -54.3 | NC_001847.1 | + | 119245 | 0.67 | 0.918153 |
Target: 5'- gAGCuggGACuGAuuauGGCGG-CGCCCGCGcGg -3' miRNA: 3'- gUCGua-UUG-CU----UCGUCaGCGGGCGC-C- -5' |
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6497 | 3' | -54.3 | NC_001847.1 | + | 130802 | 0.67 | 0.918153 |
Target: 5'- -cGCGgc-CGggGCGGaggCGgCCGCGGc -3' miRNA: 3'- guCGUauuGCuuCGUCa--GCgGGCGCC- -5' |
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6497 | 3' | -54.3 | NC_001847.1 | + | 17735 | 0.67 | 0.918153 |
Target: 5'- uCGGCGU-ACGAGGCGGccacggccucgCGCUCGCa- -3' miRNA: 3'- -GUCGUAuUGCUUCGUCa----------GCGGGCGcc -5' |
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6497 | 3' | -54.3 | NC_001847.1 | + | 4164 | 0.67 | 0.918153 |
Target: 5'- cCAGCG-AGCGGgccuuguuuugGGCcGcgCGCCCGUGGg -3' miRNA: 3'- -GUCGUaUUGCU-----------UCGuCa-GCGGGCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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