miRNA display CGI


Results 61 - 80 of 361 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6497 3' -54.3 NC_001847.1 + 24187 0.69 0.814553
Target:  5'- aAGCAgccccGCGAGGCucGUCGgcccgcccgcCCCGCGGu -3'
miRNA:   3'- gUCGUau---UGCUUCGu-CAGC----------GGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 24384 0.67 0.923264
Target:  5'- -cGCAUGgcGCGAAcuccggcGCGG-CGCgCGCGGg -3'
miRNA:   3'- guCGUAU--UGCUU-------CGUCaGCGgGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 25103 0.66 0.936414
Target:  5'- gAGCA-AGCGAgcgcagagagaagagAGCGGgcggCGgCCGCGGc -3'
miRNA:   3'- gUCGUaUUGCU---------------UCGUCa---GCgGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 25382 0.67 0.923819
Target:  5'- gCGGCAgGGCGGAGgGGga--CCGCGGa -3'
miRNA:   3'- -GUCGUaUUGCUUCgUCagcgGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 26402 0.68 0.870237
Target:  5'- gCGGCAggaacgccgucGCGucGCAGUCGCCCagccGCGa -3'
miRNA:   3'- -GUCGUau---------UGCuuCGUCAGCGGG----CGCc -5'
6497 3' -54.3 NC_001847.1 + 26474 0.71 0.729245
Target:  5'- cCAGCGc-GgGGAGCGGaaacUCGUCCGCGGc -3'
miRNA:   3'- -GUCGUauUgCUUCGUC----AGCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 27292 0.68 0.879064
Target:  5'- -cGCcgGGCGAgaggacGGCGGU-GCCgGCGGg -3'
miRNA:   3'- guCGuaUUGCU------UCGUCAgCGGgCGCC- -5'
6497 3' -54.3 NC_001847.1 + 27698 0.66 0.934413
Target:  5'- aGGCGc-GCGAgcgccGGCGGgcCGCCCGCGc -3'
miRNA:   3'- gUCGUauUGCU-----UCGUCa-GCGGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 27989 0.67 0.918153
Target:  5'- -cGCGgc-CGggGCGGaggCGgCCGCGGc -3'
miRNA:   3'- guCGUauuGCuuCGUCa--GCgGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 28510 0.66 0.92924
Target:  5'- aGGCGUGGCccGGCAG-CGCgCCGCc- -3'
miRNA:   3'- gUCGUAUUGcuUCGUCaGCG-GGCGcc -5'
6497 3' -54.3 NC_001847.1 + 28621 0.66 0.948463
Target:  5'- -uGCcgccCGAGGCGcuagUGCCCGCGGg -3'
miRNA:   3'- guCGuauuGCUUCGUca--GCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 28835 0.68 0.88617
Target:  5'- gAGCGUGACGgcGCcgcuGcCGCCgGuCGGg -3'
miRNA:   3'- gUCGUAUUGCuuCGu---CaGCGGgC-GCC- -5'
6497 3' -54.3 NC_001847.1 + 29010 0.73 0.636906
Target:  5'- cCGGCGccGGCGGcAGCGG-CGCCCGCGc -3'
miRNA:   3'- -GUCGUa-UUGCU-UCGUCaGCGGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 29366 0.66 0.946716
Target:  5'- cCGGCGgcgcugcgcgcCGAGGCGGcCGCCgCGCuGGa -3'
miRNA:   3'- -GUCGUauu--------GCUUCGUCaGCGG-GCG-CC- -5'
6497 3' -54.3 NC_001847.1 + 29446 0.74 0.573719
Target:  5'- gGGCGUGGCgccgcccgcggccGAAGC-GcCGCCCGCGGc -3'
miRNA:   3'- gUCGUAUUG-------------CUUCGuCaGCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 29525 0.67 0.893045
Target:  5'- cCGGCGcGGCu-GGCGGccgCGCUCGCGGc -3'
miRNA:   3'- -GUCGUaUUGcuUCGUCa--GCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 30257 0.7 0.796559
Target:  5'- uGGCG--GCGuuGCAG-CGCgCCGCGGc -3'
miRNA:   3'- gUCGUauUGCuuCGUCaGCG-GGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 30335 0.67 0.91224
Target:  5'- gCGGCGggcugGACGAcgAGCAccgcgcGUUGCUgGCGGg -3'
miRNA:   3'- -GUCGUa----UUGCU--UCGU------CAGCGGgCGCC- -5'
6497 3' -54.3 NC_001847.1 + 31045 0.7 0.787328
Target:  5'- cCGGCc-GACGucGCGGUCGCCgcUGUGGg -3'
miRNA:   3'- -GUCGuaUUGCuuCGUCAGCGG--GCGCC- -5'
6497 3' -54.3 NC_001847.1 + 31222 0.66 0.939341
Target:  5'- gCGGCGUGggcgcGCGaAAGCGGggcgCGCCCGg-- -3'
miRNA:   3'- -GUCGUAU-----UGC-UUCGUCa---GCGGGCgcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.