miRNA display CGI


Results 81 - 100 of 361 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6497 3' -54.3 NC_001847.1 + 31258 0.71 0.709088
Target:  5'- cCGGCGUGgacugggacGCGGAcCAGg-GCCCGCGGg -3'
miRNA:   3'- -GUCGUAU---------UGCUUcGUCagCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 31371 0.68 0.864175
Target:  5'- cCGGCccggGUGcCGgcGCAGUCGUCCcCGGg -3'
miRNA:   3'- -GUCG----UAUuGCuuCGUCAGCGGGcGCC- -5'
6497 3' -54.3 NC_001847.1 + 31419 0.66 0.934413
Target:  5'- cCGGCGccGGCGGgcGGCGGccggCGgCCGCGGc -3'
miRNA:   3'- -GUCGUa-UUGCU--UCGUCa---GCgGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 32030 0.72 0.688661
Target:  5'- cCGGCGgggcGCGggGaCGG-CGCCCGCGcGg -3'
miRNA:   3'- -GUCGUau--UGCuuC-GUCaGCGGGCGC-C- -5'
6497 3' -54.3 NC_001847.1 + 32169 0.71 0.749056
Target:  5'- aCGGCGUGcgcgGCGGAGCuuGgcgCGCgCGCGGc -3'
miRNA:   3'- -GUCGUAU----UGCUUCGu-Ca--GCGgGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 32649 0.7 0.796559
Target:  5'- gAGCuggagGGCGAGGUGGacggCGCCgGCGGc -3'
miRNA:   3'- gUCGua---UUGCUUCGUCa---GCGGgCGCC- -5'
6497 3' -54.3 NC_001847.1 + 32876 0.67 0.91224
Target:  5'- aCGGCGgccgacGGCGAGGCcucGGggGCCgGCGGg -3'
miRNA:   3'- -GUCGUa-----UUGCUUCG---UCagCGGgCGCC- -5'
6497 3' -54.3 NC_001847.1 + 33149 0.74 0.574746
Target:  5'- -cGCGUGGCGAgcgcGGCGGUUGCgCCGCu- -3'
miRNA:   3'- guCGUAUUGCU----UCGUCAGCG-GGCGcc -5'
6497 3' -54.3 NC_001847.1 + 33469 0.66 0.938859
Target:  5'- gAGCAUGGCucgcuucGAGGCGa-UGUCCGCGGc -3'
miRNA:   3'- gUCGUAUUG-------CUUCGUcaGCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 33503 0.69 0.848424
Target:  5'- gCGGCGcgGGCGGcGGCGGgCGCcgCCGCGGa -3'
miRNA:   3'- -GUCGUa-UUGCU-UCGUCaGCG--GGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 33560 0.67 0.893045
Target:  5'- gCGGCAgacgccGCgGAGGCGGcCGUgCGCGGu -3'
miRNA:   3'- -GUCGUau----UG-CUUCGUCaGCGgGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 33763 0.67 0.893045
Target:  5'- gCGGCGccGCG-GGCAGcC-CCCGCGGc -3'
miRNA:   3'- -GUCGUauUGCuUCGUCaGcGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 34445 0.68 0.87173
Target:  5'- gGGCcgcgGACGAGGCcgcgguGGcCGCCgGCGGc -3'
miRNA:   3'- gUCGua--UUGCUUCG------UCaGCGGgCGCC- -5'
6497 3' -54.3 NC_001847.1 + 34523 0.66 0.934413
Target:  5'- aCGGCGccGGCGAuGC-GcCGCCCGcCGGg -3'
miRNA:   3'- -GUCGUa-UUGCUuCGuCaGCGGGC-GCC- -5'
6497 3' -54.3 NC_001847.1 + 34756 0.68 0.88617
Target:  5'- gCGGCcgAGCuGgcGCGGcugCGCgCCGCGGc -3'
miRNA:   3'- -GUCGuaUUG-CuuCGUCa--GCG-GGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 35920 0.72 0.688661
Target:  5'- gCGGCAUGGaccGGCGGUCGCgCGCGc -3'
miRNA:   3'- -GUCGUAUUgcuUCGUCAGCGgGCGCc -5'
6497 3' -54.3 NC_001847.1 + 35993 0.67 0.899683
Target:  5'- gCAGCc--GCGcuGCAGgCGgCCGCGGg -3'
miRNA:   3'- -GUCGuauUGCuuCGUCaGCgGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 36118 0.67 0.91224
Target:  5'- gGGCGccuuccACGAAGCcGcgCGCgCCGCGGa -3'
miRNA:   3'- gUCGUau----UGCUUCGuCa-GCG-GGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 36369 0.67 0.923819
Target:  5'- gCGGCGccgccGCGGcccgGGCAGcgCGCgCCGCGGc -3'
miRNA:   3'- -GUCGUau---UGCU----UCGUCa-GCG-GGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 37007 0.74 0.534044
Target:  5'- gCGGCGgcGCGcucGAGCuGaCGCCCGCGGa -3'
miRNA:   3'- -GUCGUauUGC---UUCGuCaGCGGGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.