miRNA display CGI


Results 101 - 120 of 361 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6497 3' -54.3 NC_001847.1 + 37640 0.73 0.611962
Target:  5'- gCAGCGUGACGuuuacgcucgugcGGCAGcCGCCCaGCGa -3'
miRNA:   3'- -GUCGUAUUGCu------------UCGUCaGCGGG-CGCc -5'
6497 3' -54.3 NC_001847.1 + 38191 0.69 0.805637
Target:  5'- -cGCG-AACGAagAGCGccuGcCGCCCGCGGa -3'
miRNA:   3'- guCGUaUUGCU--UCGU---CaGCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 38289 0.66 0.934917
Target:  5'- gCGGCAggUGGCGGcAGCGGcaaccguguagccaaCGCCCGCGcGg -3'
miRNA:   3'- -GUCGU--AUUGCU-UCGUCa--------------GCGGGCGC-C- -5'
6497 3' -54.3 NC_001847.1 + 38500 0.69 0.814553
Target:  5'- -cGCcggggGGCGgcGCGGUCGCCgGCGc -3'
miRNA:   3'- guCGua---UUGCuuCGUCAGCGGgCGCc -5'
6497 3' -54.3 NC_001847.1 + 40018 0.68 0.879064
Target:  5'- gCAGCGccGGCGAcuGCAGgcUCGUCCGCGc -3'
miRNA:   3'- -GUCGUa-UUGCUu-CGUC--AGCGGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 41898 0.74 0.544134
Target:  5'- gCGGCGaGGCaGAGGUGGUCgGCUCGCGGa -3'
miRNA:   3'- -GUCGUaUUG-CUUCGUCAG-CGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 42005 0.67 0.923264
Target:  5'- uCGGCGcggAACGAAGCuG-CGCCgugccggCGCGGc -3'
miRNA:   3'- -GUCGUa--UUGCUUCGuCaGCGG-------GCGCC- -5'
6497 3' -54.3 NC_001847.1 + 42711 0.66 0.939341
Target:  5'- cCAGCccggauuUGGCGcGGCGGgcgGCCgCGCGGg -3'
miRNA:   3'- -GUCGu------AUUGCuUCGUCag-CGG-GCGCC- -5'
6497 3' -54.3 NC_001847.1 + 43128 0.7 0.796559
Target:  5'- -cGCA-GACGgcGCGG--GCCCGCGGg -3'
miRNA:   3'- guCGUaUUGCuuCGUCagCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 43148 0.67 0.906083
Target:  5'- nGGCGcuGCGcccGCAGUCGCUgGCGa -3'
miRNA:   3'- gUCGUauUGCuu-CGUCAGCGGgCGCc -5'
6497 3' -54.3 NC_001847.1 + 43245 0.73 0.616116
Target:  5'- gGGCGcgcgGGCGgcGCGG-CGCCCGgGGg -3'
miRNA:   3'- gUCGUa---UUGCuuCGUCaGCGGGCgCC- -5'
6497 3' -54.3 NC_001847.1 + 43376 0.69 0.814553
Target:  5'- cCAGCGccgccGACGGAGC----GCCCGCGGa -3'
miRNA:   3'- -GUCGUa----UUGCUUCGucagCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 43442 0.7 0.757837
Target:  5'- cCGGCGUcgcgacccggggcGACGgcGCGGUCGCCgaGCGc -3'
miRNA:   3'- -GUCGUA-------------UUGCuuCGUCAGCGGg-CGCc -5'
6497 3' -54.3 NC_001847.1 + 44298 0.69 0.823298
Target:  5'- gCGGCGcGGCGcGGCGGgccagCGCCagaGCGGu -3'
miRNA:   3'- -GUCGUaUUGCuUCGUCa----GCGGg--CGCC- -5'
6497 3' -54.3 NC_001847.1 + 45849 0.67 0.91224
Target:  5'- gCGGCAcGGCcGAGGCc-UCGgCCGCGGc -3'
miRNA:   3'- -GUCGUaUUG-CUUCGucAGCgGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 46309 0.75 0.523023
Target:  5'- cCAGcCGUAGCGccGAGCgcagcacGGcCGCCCGCGGg -3'
miRNA:   3'- -GUC-GUAUUGC--UUCG-------UCaGCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 46497 0.72 0.6473
Target:  5'- gCAGCGUGGCcGAGC-GUUGCCaGCGGc -3'
miRNA:   3'- -GUCGUAUUGcUUCGuCAGCGGgCGCC- -5'
6497 3' -54.3 NC_001847.1 + 46667 0.73 0.636906
Target:  5'- uCGGCAgaguagGGCGAGcagcacgcgcgcGCGGUCgggGCCCGCGGc -3'
miRNA:   3'- -GUCGUa-----UUGCUU------------CGUCAG---CGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 46869 0.66 0.92764
Target:  5'- cCAGCA-GGCGAAGCGcuccccccguccccGcccggCGCCCGCGc -3'
miRNA:   3'- -GUCGUaUUGCUUCGU--------------Ca----GCGGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 47548 0.72 0.698904
Target:  5'- cCAGCAcGGCGGGcGCGGggaGCCCgGCGGc -3'
miRNA:   3'- -GUCGUaUUGCUU-CGUCag-CGGG-CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.