miRNA display CGI


Results 121 - 140 of 361 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6497 3' -54.3 NC_001847.1 + 47592 0.68 0.87173
Target:  5'- aGGCGUAGu--GGCGGUagaUGCCCGCGa -3'
miRNA:   3'- gUCGUAUUgcuUCGUCA---GCGGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 47669 0.77 0.419582
Target:  5'- aCGGCcaaguuuACGAAGCGGgcgCGCgCCGCGGg -3'
miRNA:   3'- -GUCGuau----UGCUUCGUCa--GCG-GGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 47700 0.69 0.820693
Target:  5'- uCGGCGuUGGCGGccgccgggaacgccAGCccGUCGCCCGCGc -3'
miRNA:   3'- -GUCGU-AUUGCU--------------UCGu-CAGCGGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 47735 0.69 0.831863
Target:  5'- gCGGCG-GGCGggGCcc-CGCCCGCGc -3'
miRNA:   3'- -GUCGUaUUGCuuCGucaGCGGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 47799 0.69 0.831863
Target:  5'- uCGGCGcccGCGAucGGCuccaGGUUGUCCGCGGu -3'
miRNA:   3'- -GUCGUau-UGCU--UCG----UCAGCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 47963 0.69 0.814553
Target:  5'- cCAGCAgcGCguggaggauguuGAGGCuGUCGCUCGCGc -3'
miRNA:   3'- -GUCGUauUG------------CUUCGuCAGCGGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 48407 0.66 0.939341
Target:  5'- gCGGCAaAGCGGGacGC-GUCGCCgGCGc -3'
miRNA:   3'- -GUCGUaUUGCUU--CGuCAGCGGgCGCc -5'
6497 3' -54.3 NC_001847.1 + 48748 0.66 0.92924
Target:  5'- gCAGUAUGACucAGCcGcgCGCCCGCc- -3'
miRNA:   3'- -GUCGUAUUGcuUCGuCa-GCGGGCGcc -5'
6497 3' -54.3 NC_001847.1 + 49349 0.66 0.948463
Target:  5'- aCGGCAUucgcgccaAACGucgcGGUGGUCGCCgGCa- -3'
miRNA:   3'- -GUCGUA--------UUGCu---UCGUCAGCGGgCGcc -5'
6497 3' -54.3 NC_001847.1 + 49732 0.66 0.934413
Target:  5'- gGGCGccGGCGAGGCGGUgCGCgugCCGCu- -3'
miRNA:   3'- gUCGUa-UUGCUUCGUCA-GCG---GGCGcc -5'
6497 3' -54.3 NC_001847.1 + 50037 0.68 0.864175
Target:  5'- cCAGCcc-GCGggGCGcGguggCGgCCGCGGg -3'
miRNA:   3'- -GUCGuauUGCuuCGU-Ca---GCgGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 51060 0.69 0.848424
Target:  5'- gAGCAggccacCGAGGCGuUCGUgCGCGGg -3'
miRNA:   3'- gUCGUauu---GCUUCGUcAGCGgGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 51152 0.7 0.768442
Target:  5'- uCAGCAgAACGggGaCGG-CGCCuucgCGCGGu -3'
miRNA:   3'- -GUCGUaUUGCuuC-GUCaGCGG----GCGCC- -5'
6497 3' -54.3 NC_001847.1 + 51275 0.67 0.899683
Target:  5'- gCAGCGccGCGgcGCgcucggggaAGUgGCCCGCGa -3'
miRNA:   3'- -GUCGUauUGCuuCG---------UCAgCGGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 51417 0.68 0.864175
Target:  5'- gCGGCGgcgcaGACGGAGC---CGCCCGCGc -3'
miRNA:   3'- -GUCGUa----UUGCUUCGucaGCGGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 51650 0.67 0.899683
Target:  5'- gCAGCGccGCGgcGCuG-CGCCCGCa- -3'
miRNA:   3'- -GUCGUauUGCuuCGuCaGCGGGCGcc -5'
6497 3' -54.3 NC_001847.1 + 51815 0.67 0.91224
Target:  5'- cCAGCAUgucgAugGAGGCGccaagCGCCCccgugcGCGGg -3'
miRNA:   3'- -GUCGUA----UugCUUCGUca---GCGGG------CGCC- -5'
6497 3' -54.3 NC_001847.1 + 52038 0.7 0.787328
Target:  5'- -uGCuacGCGAGGCGGagGCCCGCccGGa -3'
miRNA:   3'- guCGuauUGCUUCGUCagCGGGCG--CC- -5'
6497 3' -54.3 NC_001847.1 + 52117 0.68 0.87173
Target:  5'- cUAGCGgccGCGGgccGGCGG-CGCCCcaGCGGa -3'
miRNA:   3'- -GUCGUau-UGCU---UCGUCaGCGGG--CGCC- -5'
6497 3' -54.3 NC_001847.1 + 52479 0.71 0.719205
Target:  5'- aCAGCAcgAGCGcGGCGcgccgCGCUCGCGGg -3'
miRNA:   3'- -GUCGUa-UUGCuUCGUca---GCGGGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.