miRNA display CGI


Results 41 - 60 of 361 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6497 3' -54.3 NC_001847.1 + 119796 0.67 0.923819
Target:  5'- aAGUG-AGCGAAGCGGcacUGCgCGCGGa -3'
miRNA:   3'- gUCGUaUUGCUUCGUCa--GCGgGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 119368 0.66 0.944023
Target:  5'- gCGGCGcuugccgccGGCGaAAGCGGgcCGCCCGCGu -3'
miRNA:   3'- -GUCGUa--------UUGC-UUCGUCa-GCGGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 119245 0.67 0.918153
Target:  5'- gAGCuggGACuGAuuauGGCGG-CGCCCGCGcGg -3'
miRNA:   3'- gUCGua-UUG-CU----UCGUCaGCGGGCGC-C- -5'
6497 3' -54.3 NC_001847.1 + 119068 0.7 0.768442
Target:  5'- uCAGCGUAcuggagGCGcccAGCAGagGCgCCGCGGc -3'
miRNA:   3'- -GUCGUAU------UGCu--UCGUCagCG-GGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 118981 0.79 0.306659
Target:  5'- gCGGCc-AACGggGCGGUCGCCC-CGGc -3'
miRNA:   3'- -GUCGuaUUGCuuCGUCAGCGGGcGCC- -5'
6497 3' -54.3 NC_001847.1 + 118407 0.75 0.514071
Target:  5'- uCAGCGU--CGuGGCcGUCGCCUGCGGu -3'
miRNA:   3'- -GUCGUAuuGCuUCGuCAGCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 117529 0.67 0.906083
Target:  5'- gCGGCGacGACGAGGCcGUgCGCaaccccuuuCCGCGGg -3'
miRNA:   3'- -GUCGUa-UUGCUUCGuCA-GCG---------GGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 117452 0.73 0.626509
Target:  5'- uGGaCAUGGCGGAGaCGGUggUGCCCgGCGGa -3'
miRNA:   3'- gUC-GUAUUGCUUC-GUCA--GCGGG-CGCC- -5'
6497 3' -54.3 NC_001847.1 + 117328 0.69 0.848424
Target:  5'- cUAGCGgcGgGggGCGGccUCGCCCcccGCGGc -3'
miRNA:   3'- -GUCGUauUgCuuCGUC--AGCGGG---CGCC- -5'
6497 3' -54.3 NC_001847.1 + 116613 0.68 0.88617
Target:  5'- -uGCGgcGCGGacGGCGGcgCGCCCGCa- -3'
miRNA:   3'- guCGUauUGCU--UCGUCa-GCGGGCGcc -5'
6497 3' -54.3 NC_001847.1 + 115687 0.69 0.805637
Target:  5'- -cGCGcGGCGGAGCGGcUgGCCCggcaGCGGg -3'
miRNA:   3'- guCGUaUUGCUUCGUC-AgCGGG----CGCC- -5'
6497 3' -54.3 NC_001847.1 + 115052 0.69 0.848424
Target:  5'- gGGC-UAGCGAuGGCcgGGcCGCgCCGCGGg -3'
miRNA:   3'- gUCGuAUUGCU-UCG--UCaGCG-GGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 114939 0.74 0.574746
Target:  5'- -cGCGUuuGGCGggGCGGggcgcCGCCCcGCGGu -3'
miRNA:   3'- guCGUA--UUGCuuCGUCa----GCGGG-CGCC- -5'
6497 3' -54.3 NC_001847.1 + 114507 0.66 0.934413
Target:  5'- aAGC-UGACGAaagaacugcAGCGGUCGgCgcggCGCGGg -3'
miRNA:   3'- gUCGuAUUGCU---------UCGUCAGCgG----GCGCC- -5'
6497 3' -54.3 NC_001847.1 + 114412 0.72 0.668041
Target:  5'- uCGGCGUugagguaGAAGCGGUcCGCCaGCGGg -3'
miRNA:   3'- -GUCGUAuug----CUUCGUCA-GCGGgCGCC- -5'
6497 3' -54.3 NC_001847.1 + 113919 0.71 0.749056
Target:  5'- gCAGCGaGAgGAAGCAGcgCGCggUCGCGGc -3'
miRNA:   3'- -GUCGUaUUgCUUCGUCa-GCG--GGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 113840 0.68 0.88617
Target:  5'- -cGCGUGGCGcgcCGGUC-CCCGUGGa -3'
miRNA:   3'- guCGUAUUGCuucGUCAGcGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 113545 0.69 0.840241
Target:  5'- cCAGCGaguuUAGgGggGCGGggcCCCGCGGc -3'
miRNA:   3'- -GUCGU----AUUgCuuCGUCagcGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 109200 0.71 0.739199
Target:  5'- gGGCGgguGCGAucgGGCAGaccaagCGCCgGCGGg -3'
miRNA:   3'- gUCGUau-UGCU---UCGUCa-----GCGGgCGCC- -5'
6497 3' -54.3 NC_001847.1 + 108341 0.69 0.831863
Target:  5'- cCAGCGUcACG--GCcGUCGUCUGCGGc -3'
miRNA:   3'- -GUCGUAuUGCuuCGuCAGCGGGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.