miRNA display CGI


Results 61 - 80 of 361 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6497 3' -54.3 NC_001847.1 + 108068 0.7 0.787328
Target:  5'- cCAGCGUG--GgcGCGGUgcCGCCCGgGGg -3'
miRNA:   3'- -GUCGUAUugCuuCGUCA--GCGGGCgCC- -5'
6497 3' -54.3 NC_001847.1 + 107693 0.74 0.564491
Target:  5'- aCGGCGccuGCGGuuGGCGG-CGCUCGCGGg -3'
miRNA:   3'- -GUCGUau-UGCU--UCGUCaGCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 107029 0.68 0.856404
Target:  5'- cCGGcCAUGAaauCGgcGguGUCGCgCGCGGc -3'
miRNA:   3'- -GUC-GUAUU---GCuuCguCAGCGgGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 106770 0.69 0.848424
Target:  5'- aCAGCA-GGCgGAAGCGGUCuGCagcaGCGGg -3'
miRNA:   3'- -GUCGUaUUG-CUUCGUCAG-CGgg--CGCC- -5'
6497 3' -54.3 NC_001847.1 + 106715 0.67 0.904822
Target:  5'- gCGGCGUAGCcAGcGCGGgcgccgguugcgCGCCCGCGc -3'
miRNA:   3'- -GUCGUAUUGcUU-CGUCa-----------GCGGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 106659 0.71 0.739199
Target:  5'- gCGGCG--GCGccGCGG-CGUCCGCGGc -3'
miRNA:   3'- -GUCGUauUGCuuCGUCaGCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 106583 0.7 0.796559
Target:  5'- aGGCccu-CGcGGguGUCGCCCGCGc -3'
miRNA:   3'- gUCGuauuGCuUCguCAGCGGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 106540 0.75 0.524021
Target:  5'- -cGCGUAGCGc-GCGGcCGCCuCGCGGa -3'
miRNA:   3'- guCGUAUUGCuuCGUCaGCGG-GCGCC- -5'
6497 3' -54.3 NC_001847.1 + 106000 0.66 0.92924
Target:  5'- gCGGCAggcGACGGcgcAGCGGUCcgccaGCUCGCGc -3'
miRNA:   3'- -GUCGUa--UUGCU---UCGUCAG-----CGGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 105760 0.67 0.893045
Target:  5'- gGGCcucgcGCGcGGCAGcuccggcCGCCCGCGGu -3'
miRNA:   3'- gUCGuau--UGCuUCGUCa------GCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 105669 0.66 0.944023
Target:  5'- gAGCGUGccgccucggccGCG-GGCGGcgcuUCGgCCGCGGg -3'
miRNA:   3'- gUCGUAU-----------UGCuUCGUC----AGCgGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 105641 0.71 0.729245
Target:  5'- -uGCGgc-CGAAGC-GcCGCCCGCGGc -3'
miRNA:   3'- guCGUauuGCUUCGuCaGCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 105586 0.66 0.944023
Target:  5'- cCGGCAcGGCGuccguGCGGgggaacucgagCGCCCGCGc -3'
miRNA:   3'- -GUCGUaUUGCuu---CGUCa----------GCGGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 104884 0.67 0.923819
Target:  5'- gCAGCgGUGGCGgcG-AG-CGcCCCGCGGg -3'
miRNA:   3'- -GUCG-UAUUGCuuCgUCaGC-GGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 104350 0.69 0.805637
Target:  5'- gCGGCA-GACGcGGCGG-CGUCCGCGc -3'
miRNA:   3'- -GUCGUaUUGCuUCGUCaGCGGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 103856 0.72 0.6473
Target:  5'- gCAGCAgcACG-AGC-GUCuCCCGCGGg -3'
miRNA:   3'- -GUCGUauUGCuUCGuCAGcGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 103814 0.68 0.856404
Target:  5'- gCGGCGgcACGcgcuccaccAGGCcGcCGCCCGCGGc -3'
miRNA:   3'- -GUCGUauUGC---------UUCGuCaGCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 103297 0.69 0.829313
Target:  5'- gCAGCGgcggcGGCGggGCGGccgCGCgccaaccccccuguCCGCGGa -3'
miRNA:   3'- -GUCGUa----UUGCuuCGUCa--GCG--------------GGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 103000 0.68 0.87173
Target:  5'- gCGGCGUGcgcggGCGcGGCGG-CGCCCagcgccggcgGCGGg -3'
miRNA:   3'- -GUCGUAU-----UGCuUCGUCaGCGGG----------CGCC- -5'
6497 3' -54.3 NC_001847.1 + 102853 0.76 0.475099
Target:  5'- gCGGCGUcGCGggGCcG-CGCCaCGCGGa -3'
miRNA:   3'- -GUCGUAuUGCuuCGuCaGCGG-GCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.