miRNA display CGI


Results 81 - 100 of 361 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6497 3' -54.3 NC_001847.1 + 102746 0.66 0.939341
Target:  5'- aCGGCc-GACGggGC-GUCGUgCCGCGu -3'
miRNA:   3'- -GUCGuaUUGCuuCGuCAGCG-GGCGCc -5'
6497 3' -54.3 NC_001847.1 + 102678 0.69 0.805637
Target:  5'- gGGCGggggGGCGggGCGGgggcagggCGCCgGgCGGg -3'
miRNA:   3'- gUCGUa---UUGCuuCGUCa-------GCGGgC-GCC- -5'
6497 3' -54.3 NC_001847.1 + 102576 0.67 0.918153
Target:  5'- gCAGCuUGGCGuccGCcaGGUCGCCCaGCGc -3'
miRNA:   3'- -GUCGuAUUGCuu-CG--UCAGCGGG-CGCc -5'
6497 3' -54.3 NC_001847.1 + 102382 0.72 0.688661
Target:  5'- cCGGcCGUcGCGAAGC-GcCGCCCGCGa -3'
miRNA:   3'- -GUC-GUAuUGCUUCGuCaGCGGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 102232 0.66 0.944023
Target:  5'- gGGCGgGACGGcguccaGGCGcUCGCgCGCGGc -3'
miRNA:   3'- gUCGUaUUGCU------UCGUcAGCGgGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 101904 0.67 0.893045
Target:  5'- gCAGCGgagGCGccGCGG-CGCCCggcGCGGc -3'
miRNA:   3'- -GUCGUau-UGCuuCGUCaGCGGG---CGCC- -5'
6497 3' -54.3 NC_001847.1 + 101863 0.67 0.899683
Target:  5'- gAGCAggucGCGGAGgAGcUCGCCuuugcgCGCGGa -3'
miRNA:   3'- gUCGUau--UGCUUCgUC-AGCGG------GCGCC- -5'
6497 3' -54.3 NC_001847.1 + 101363 0.67 0.899683
Target:  5'- -uGCAUGcgcgcgcuuGCGccGCGGgggcUGCCCGCGGc -3'
miRNA:   3'- guCGUAU---------UGCuuCGUCa---GCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 101234 0.66 0.92924
Target:  5'- gAGCugccAC-AGGCGGUccugcaCGCCCGCGGc -3'
miRNA:   3'- gUCGuau-UGcUUCGUCA------GCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 100349 0.66 0.948463
Target:  5'- cCAGCGgccGCGGGucGUAGccgCGCgCCGCGGc -3'
miRNA:   3'- -GUCGUau-UGCUU--CGUCa--GCG-GGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 99778 0.72 0.668041
Target:  5'- gCGGCuuugGGCGGggGGCAG-CGCCUGUGGu -3'
miRNA:   3'- -GUCGua--UUGCU--UCGUCaGCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 99018 0.7 0.768442
Target:  5'- aCAGCGcugccucgGGCGGcgAGCAc-CGCCCGCGGa -3'
miRNA:   3'- -GUCGUa-------UUGCU--UCGUcaGCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 97890 0.67 0.917572
Target:  5'- gCGGCGcggaUGGCGAacAGCgcgccguccgccgGGUCGUCCGCGc -3'
miRNA:   3'- -GUCGU----AUUGCU--UCG-------------UCAGCGGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 97163 0.79 0.306659
Target:  5'- cCAGCAUAAUGAGGCAGggcggCGCgCUGCGu -3'
miRNA:   3'- -GUCGUAUUGCUUCGUCa----GCG-GGCGCc -5'
6497 3' -54.3 NC_001847.1 + 97097 0.68 0.87173
Target:  5'- uUAGCcgcGGCGgcGCGGUUGgCCGCGa -3'
miRNA:   3'- -GUCGua-UUGCuuCGUCAGCgGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 95963 0.73 0.636906
Target:  5'- gAGCGUGAgCGcAGCAGcCGCugCCGCGGc -3'
miRNA:   3'- gUCGUAUU-GCuUCGUCaGCG--GGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 95926 0.66 0.934413
Target:  5'- aCGGCAUcagcuCGAAGCuGgccaugaccaUCGCCCGCu- -3'
miRNA:   3'- -GUCGUAuu---GCUUCGuC----------AGCGGGCGcc -5'
6497 3' -54.3 NC_001847.1 + 95343 0.68 0.87173
Target:  5'- -cGCG-GACGAcGCGGUCGaCUgGCGGg -3'
miRNA:   3'- guCGUaUUGCUuCGUCAGC-GGgCGCC- -5'
6497 3' -54.3 NC_001847.1 + 95117 0.75 0.49441
Target:  5'- gGGCGcgGACGAGccuGCAGUCGCCgGCGc -3'
miRNA:   3'- gUCGUa-UUGCUU---CGUCAGCGGgCGCc -5'
6497 3' -54.3 NC_001847.1 + 94217 0.69 0.805637
Target:  5'- gCGGCGgagcuCGcGGCGGggCGCCCGCGcGg -3'
miRNA:   3'- -GUCGUauu--GCuUCGUCa-GCGGGCGC-C- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.