miRNA display CGI


Results 101 - 120 of 361 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6497 3' -54.3 NC_001847.1 + 93061 0.66 0.939341
Target:  5'- cCGGCAccGCGAGGCcGaugCGCCgcaGCGGc -3'
miRNA:   3'- -GUCGUauUGCUUCGuCa--GCGGg--CGCC- -5'
6497 3' -54.3 NC_001847.1 + 92070 0.66 0.92924
Target:  5'- -cGCcgAGCc-AGCAG-CGCCCGCGu -3'
miRNA:   3'- guCGuaUUGcuUCGUCaGCGGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 91996 0.81 0.25332
Target:  5'- cCAGCGacuGCGGGcGCAG-CGCCCGCGGg -3'
miRNA:   3'- -GUCGUau-UGCUU-CGUCaGCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 91733 0.67 0.906083
Target:  5'- gCAGCAgcGCGAGGUccgcGUaCGCCCaucgguccGCGGg -3'
miRNA:   3'- -GUCGUauUGCUUCGu---CA-GCGGG--------CGCC- -5'
6497 3' -54.3 NC_001847.1 + 91559 0.76 0.456172
Target:  5'- cCAGCGccACGcugGGGCGcgcGUCGCCCGCGGc -3'
miRNA:   3'- -GUCGUauUGC---UUCGU---CAGCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 91461 0.66 0.939341
Target:  5'- gAGCGUccacACGAGGUcGUCGagcaCCUGCGGc -3'
miRNA:   3'- gUCGUAu---UGCUUCGuCAGC----GGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 91376 0.67 0.923819
Target:  5'- cCAGCAccGGCaGGAuGCAGUCgaagagGCCCGCGu -3'
miRNA:   3'- -GUCGUa-UUG-CUU-CGUCAG------CGGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 90831 0.67 0.899683
Target:  5'- aGGCGgGGCGAgaucagcgAGCGG-CGCCC-CGGg -3'
miRNA:   3'- gUCGUaUUGCU--------UCGUCaGCGGGcGCC- -5'
6497 3' -54.3 NC_001847.1 + 90725 0.68 0.87173
Target:  5'- -uGC---GCGAAcGCAGcCGCUCGCGGc -3'
miRNA:   3'- guCGuauUGCUU-CGUCaGCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 90226 0.67 0.899683
Target:  5'- cCAGCGacACGGucGCGGcCGCCgcCGCGGc -3'
miRNA:   3'- -GUCGUauUGCUu-CGUCaGCGG--GCGCC- -5'
6497 3' -54.3 NC_001847.1 + 89969 0.72 0.657681
Target:  5'- cCAGCGcgcGGCgGAAGCGGUgcugCGCgCCGCGGg -3'
miRNA:   3'- -GUCGUa--UUG-CUUCGUCA----GCG-GGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 89537 0.7 0.796559
Target:  5'- gCGGCAgcGACGGGuCAGauUgGCCCGCGGg -3'
miRNA:   3'- -GUCGUa-UUGCUUcGUC--AgCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 89056 0.67 0.905454
Target:  5'- aCGGCAUGGCGcgccggguuucGGCGGcgcucuuUCGCCCGCc- -3'
miRNA:   3'- -GUCGUAUUGCu----------UCGUC-------AGCGGGCGcc -5'
6497 3' -54.3 NC_001847.1 + 88551 0.66 0.92924
Target:  5'- -cGCGUGGCGugaccGCGcUCGCgCGCGGc -3'
miRNA:   3'- guCGUAUUGCuu---CGUcAGCGgGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 88544 0.68 0.856404
Target:  5'- -uGCGccGCGAGGCcG-CGCCgGCGGg -3'
miRNA:   3'- guCGUauUGCUUCGuCaGCGGgCGCC- -5'
6497 3' -54.3 NC_001847.1 + 86482 0.66 0.945381
Target:  5'- gCGGCAcgGACGAcgaggcugcgggggcGGCGG-CGCCCcgccgccGCGGc -3'
miRNA:   3'- -GUCGUa-UUGCU---------------UCGUCaGCGGG-------CGCC- -5'
6497 3' -54.3 NC_001847.1 + 86369 0.67 0.899683
Target:  5'- -cGCA-GACGAGGCGG-CgGgCCGCGGc -3'
miRNA:   3'- guCGUaUUGCUUCGUCaG-CgGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 86361 0.69 0.823298
Target:  5'- cCGGCugu-UGcGGCGGU-GCCCGCGGa -3'
miRNA:   3'- -GUCGuauuGCuUCGUCAgCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 85838 0.66 0.92924
Target:  5'- -cGCGUuauGCGucGAGCGcGUCGCUggCGCGGa -3'
miRNA:   3'- guCGUAu--UGC--UUCGU-CAGCGG--GCGCC- -5'
6497 3' -54.3 NC_001847.1 + 85366 0.67 0.906083
Target:  5'- gGGCGUGGC-AAGC-GUCGCCagCGCGu -3'
miRNA:   3'- gUCGUAUUGcUUCGuCAGCGG--GCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.