miRNA display CGI


Results 61 - 80 of 361 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6497 3' -54.3 NC_001847.1 + 131823 0.73 0.636906
Target:  5'- cCGGCGccGGCGGcAGCGG-CGCCCGCGc -3'
miRNA:   3'- -GUCGUa-UUGCU-UCGUCaGCGGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 103856 0.72 0.6473
Target:  5'- gCAGCAgcACG-AGC-GUCuCCCGCGGg -3'
miRNA:   3'- -GUCGUauUGCuUCGuCAGcGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 74977 0.72 0.698904
Target:  5'- aCAGCGacggGGCGggGCgccaggcucAGUcCGCCgGCGGg -3'
miRNA:   3'- -GUCGUa---UUGCuuCG---------UCA-GCGGgCGCC- -5'
6497 3' -54.3 NC_001847.1 + 120714 0.71 0.709088
Target:  5'- cCGGCGccguCGAGGCAGUCGCgacCCGCu- -3'
miRNA:   3'- -GUCGUauu-GCUUCGUCAGCG---GGCGcc -5'
6497 3' -54.3 NC_001847.1 + 54094 0.71 0.709088
Target:  5'- cCGGCAaccuaGAGGCGcUCGCCgCGCGGg -3'
miRNA:   3'- -GUCGUauug-CUUCGUcAGCGG-GCGCC- -5'
6497 3' -54.3 NC_001847.1 + 134071 0.71 0.709088
Target:  5'- cCGGCGUGgacugggacGCGGAcCAGg-GCCCGCGGg -3'
miRNA:   3'- -GUCGUAU---------UGCUUcGUCagCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 14026 0.71 0.729245
Target:  5'- aCAGCAUA--GAGGCgcuGGUCGgCCGCGa -3'
miRNA:   3'- -GUCGUAUugCUUCG---UCAGCgGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 26474 0.71 0.729245
Target:  5'- cCAGCGc-GgGGAGCGGaaacUCGUCCGCGGc -3'
miRNA:   3'- -GUCGUauUgCUUCGUC----AGCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 120084 0.71 0.729245
Target:  5'- gAGCcgcGCGggGCGGgagauaaagCGCCCGCGc -3'
miRNA:   3'- gUCGuauUGCuuCGUCa--------GCGGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 17810 0.71 0.733237
Target:  5'- -cGCGgggGGCGAGGCcgccccccgccgcuaGGUCGCCCaucGCGGc -3'
miRNA:   3'- guCGUa--UUGCUUCG---------------UCAGCGGG---CGCC- -5'
6497 3' -54.3 NC_001847.1 + 18974 0.72 0.698904
Target:  5'- cCAGCGcGGCc--GCGG-CGCCCGCGGc -3'
miRNA:   3'- -GUCGUaUUGcuuCGUCaGCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 65740 0.72 0.698904
Target:  5'- gCGGCGcu-CGAgAGCguGGUgGCCCGCGGg -3'
miRNA:   3'- -GUCGUauuGCU-UCG--UCAgCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 53092 0.72 0.6473
Target:  5'- uCAGCGUucGGCGggGCGG-CGgCCCGCc- -3'
miRNA:   3'- -GUCGUA--UUGCuuCGUCaGC-GGGCGcc -5'
6497 3' -54.3 NC_001847.1 + 89969 0.72 0.657681
Target:  5'- cCAGCGcgcGGCgGAAGCGGUgcugCGCgCCGCGGg -3'
miRNA:   3'- -GUCGUa--UUG-CUUCGUCA----GCG-GGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 99778 0.72 0.668041
Target:  5'- gCGGCuuugGGCGGggGGCAG-CGCCUGUGGu -3'
miRNA:   3'- -GUCGua--UUGCU--UCGUCaGCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 114412 0.72 0.668041
Target:  5'- uCGGCGUugagguaGAAGCGGUcCGCCaGCGGg -3'
miRNA:   3'- -GUCGUAuug----CUUCGUCA-GCGGgCGCC- -5'
6497 3' -54.3 NC_001847.1 + 9733 0.72 0.688661
Target:  5'- cCGGCGgcgcCGggGCAGUCG-CCGuCGGu -3'
miRNA:   3'- -GUCGUauu-GCuuCGUCAGCgGGC-GCC- -5'
6497 3' -54.3 NC_001847.1 + 134843 0.72 0.688661
Target:  5'- cCGGCGgggcGCGggGaCGG-CGCCCGCGcGg -3'
miRNA:   3'- -GUCGUau--UGCuuC-GUCaGCGGGCGC-C- -5'
6497 3' -54.3 NC_001847.1 + 47548 0.72 0.698904
Target:  5'- cCAGCAcGGCGGGcGCGGggaGCCCgGCGGc -3'
miRNA:   3'- -GUCGUaUUGCUU-CGUCag-CGGG-CGCC- -5'
6497 3' -54.3 NC_001847.1 + 52589 0.72 0.698904
Target:  5'- gCGGCGgc-CGAGGCcga-GCCCGCGGg -3'
miRNA:   3'- -GUCGUauuGCUUCGucagCGGGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.